Factsheet for Bra038853.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82665	Canola	mitochondrion, plastid	94.97	95.38
AT2G19280.1	Thale cress	mitochondrion	76.15	76.48
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	38.94	38.28
Bra015229.1-P	Field mustard	mitochondrion	23.13	25.43
Bra040883.1-P	Field mustard	endoplasmic reticulum	20.69	25.04
Bra015447.1-P	Field mustard	cytosol	15.23	24.31
Bra028204.1-P	Field mustard	cytosol	19.83	23.27
Bra020001.1-P	Field mustard	mitochondrion	19.83	23.0
Bra013432.1-P	Field mustard	cytosol	15.23	21.41
Bra024831.1-P	Field mustard	mitochondrion	22.27	21.17
Bra019985.1-P	Field mustard	cytosol	18.39	20.91
Bra025578.1-P	Field mustard	plastid	18.25	20.39
Bra022891.1-P	Field mustard	plastid	17.96	20.36
Bra017434.1-P	Field mustard	cytosol, plastid	16.24	20.29
Bra025651.1-P	Field mustard	mitochondrion	21.55	20.13
Bra005695.1-P	Field mustard	mitochondrion	20.26	19.03
Bra024554.1-P	Field mustard	cytosol	9.2	18.93
Bra035931.1-P	Field mustard	mitochondrion	17.39	18.7
Bra024552.1-P	Field mustard	cytosol	5.6	15.48
Bra002000.1-P	Field mustard	cytosol	6.47	14.85
Bra026410.1-P	Field mustard	mitochondrion	14.37	7.58

Protein Annotations

EnsemblPlants:Bra038853.1	EnsemblPlants:Bra038853.1-P	EnsemblPlantsGene:Bra038853	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF325	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756
UniParc:UPI0002541077	UniProt:M4FCN4	MapMan:35.1	:	:	:

Description

AT2G19280 (E=2e-299) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA07:-:987064..989154

Molecular Weight (calculated)

77753.4 Da

IEP (calculated)

7.132

GRAVY (calculated)

0.068

Length

696 amino acids

Sequence
(BLAST)

001: MWVSSSILKS SGFARTKAFR YIWSTPFLFH PPLADYNNPR LLHSGSGNTT HFASRHYASN TGVRSSKPFG EDFDTTLKHI EVSDSSVETI RNVLIKHSWI
101: HRFESEFSIE LDEYKVIRIL DDLFAETSDA SIALYFFKWS ELWIGAEHSS RSICRMVHIL VSGNMNFRAV DMLLHLVKKR SDGEERSLCL VMNDLFETRG
201: DREVLETVFS MLVDCCVKER KVDVAMKLAY KMDQLGIFPS RGVCISLLKE ILRINNGLEL AREFVEHMIS RGRRLNAAVL TLFISKHCSD GSFDKAWELL
301: MEMKQQYGIK PDIVAFTVFI HSLCKAGFPK EATSVLFNLK LFGISQDSVS VSCVIDGFCK AGKPEEAVKL IHYFRLRPNI FVYSSFLSKI CTEGDMLKAS
401: TVFQEIFELG LLPDCVCYTT MIGGYCKLGK IDEAFKCFGA MLKSGNSPSL TTYTLLIGGC SKSGNVGDAE ALFRNMKVEG LVPDVVTYNN LMNGYGKTHQ
501: LNKVFEVIDG MRSAGVSPDV ATYNILIHSM VVRGYVDEAN GIVNELTRRG FVPSVLAFTD VIGGFSKKGD FQEAFLLWHY MAELRVQPDV VTCSALLHGN
601: CRAQRMGDAM VLFNKLLDAG LKPDVVLYNT LIHGYCSVGE TEKACELIGM MVQRGMVPNE STYVALVVGL EGKSGVNSEK HASMLLEEIF VANSAK

Best Arabidopsis Sequence Match ( AT2G19280.4 )
(BLAST)

001: MWVSIFNLKS SGLNHFCTRT KAFRYFWCRT FSLASLSENN SRFQTDSSRL PYSGSRYYHS SSKHFGEDFV SILKNIDVPR DCVETIRNVL VKHNWIQKYE
101: SGFSTELDQY TVIRILDDLF EETLDASIVL YFFRWSELWI GVEHSSRSIS RMIHILVSGN MNYRAVDMLL CLVKKCSGEE RSLCLVMKDL FETRIDRRVL
201: ETVFSILIDC CIRERKVNMA LKLTYKVDQF GIFPSRGVCI SLLKEILRVH GLELAREFVE HMLSRGRHLN AAVLSLFIRK YCSDGYFDKG WELLMGMKHY
301: GIRPDIVAFT VFIDKLCKAG FLKEATSVLF KLKLFGISQD SVSVSSVIDG FCKVGKPEEA IKLIHSFRLR PNIFVYSSFL SNICSTGDML RASTIFQEIF
401: ELGLLPDCVC YTTMIDGYCN LGRTDKAFQY FGALLKSGNP PSLTTSTILI GACSRFGSIS DAESVFRNMK TEGLKLDVVT YNNLMHGYGK THQLNKVFEL
501: IDEMRSAGIS PDVATYNILI HSMVVRGYID EANEIISELI RRGFVPSTLA FTDVIGGFSK RGDFQEAFIL WFYMADLRMK PDVVTCSALL HGYCKAQRME
601: KAIVLFNKLL DAGLKPDVVL YNTLIHGYCS VGDIEKACEL IGLMVQRGML PNESTHHALV LGLEGKRFVN SETHASMLLE EIIVAKWHLT SGG

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g19280 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.