Factsheet for Bra024554.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024552.1-P	Field mustard	cytosol	73.08	98.02
CDY04754	Canola	cytosol	66.86	93.39
AT1G22960.1	Thale cress	mitochondrion	76.04	35.79
KRH16451	Soybean	plastid	54.14	26.64
KRH18049	Soybean	plastid	53.85	26.49
Zm00001d000093_P001	Maize	cytosol	40.24	25.71
VIT_01s0011g04390.t01	Wine grape	plastid	52.66	24.79
PGSC0003DMT400078379	Potato	cytosol	50.59	24.71
Solyc05g008560.1.1	Tomato	mitochondrion	51.78	23.21
GSMUA_Achr6P35510_001	Banana	cytosol	47.34	22.82
Bra002000.1-P	Field mustard	cytosol	19.23	21.45
EES09272	Sorghum	plastid	44.67	20.77
Bra015447.1-P	Field mustard	cytosol	26.63	20.64
Os12t0152600-01	Rice	plastid	42.9	20.25
Zm00001d023422_P001	Maize	plastid	42.6	20.11
Zm00001d052540_P001	Maize	plastid	42.6	19.97
HORVU5Hr1G042300.1	Barley	plastid	41.42	19.64
Zm00001d044707_P001	Maize	plastid	40.83	19.38
OQU78719	Sorghum	cytosol	43.79	19.37
TraesCS5B01G127400.1	Wheat	plastid	36.09	18.15
TraesCS5A01G128400.1	Wheat	plastid	36.09	18.15
TraesCS5D01G136000.1	Wheat	plastid	35.8	18.01
Bra013432.1-P	Field mustard	cytosol	22.49	15.35
Bra017434.1-P	Field mustard	cytosol, plastid	22.78	13.82
Bra035931.1-P	Field mustard	mitochondrion	25.74	13.45
Bra040883.1-P	Field mustard	endoplasmic reticulum	21.3	12.52
Bra015229.1-P	Field mustard	mitochondrion	23.37	12.48
Bra025651.1-P	Field mustard	mitochondrion	27.22	12.35
Bra005695.1-P	Field mustard	mitochondrion	25.44	11.61
Bra019985.1-P	Field mustard	cytosol	20.41	11.27
Bra022891.1-P	Field mustard	plastid	20.12	11.07
Bra024831.1-P	Field mustard	mitochondrion	23.37	10.79
Bra028204.1-P	Field mustard	cytosol	18.34	10.46
Bra020001.1-P	Field mustard	mitochondrion	18.05	10.17
CDY04753	Canola	mitochondrion, plastid	11.83	9.62
Bra038853.1-P	Field mustard	mitochondrion	18.93	9.2
Bra025578.1-P	Field mustard	plastid	13.91	7.54
Bra026410.1-P	Field mustard	mitochondrion	13.02	3.34

Protein Annotations

EnsemblPlants:Bra024554.1	EnsemblPlants:Bra024554.1-P	EnsemblPlantsGene:Bra024554	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF724	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI0002542A12	UniProt:M4E6Z9	MapMan:35.1	:	:

Description

AT1G22960 (E=2e-145) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA09:+:24444397..24445413

Molecular Weight (calculated)

39341.8 Da

IEP (calculated)

8.841

GRAVY (calculated)

-0.471

Length

338 amino acids

Sequence
(BLAST)

001: MHGYVKLRKI REAFLLFGEL IVRNIRPSVV TYNTLMDGLC ESGDLETAQR LKAEMSRQRI DPDVKTYTTL VKGFVKKGNL SMATATYDEM LEKGIKPDRY
101: ACTTRLVGEL QLGDKDKAFR LQEEMVAKDH NARDLISYNV CIDGLCKVGD LERAIEFQRK IYRDGLVPDH VTYTTVIRAY LEKGRFKMAK VLYQEMLRKK
201: LSPSVVTYFV LIHGHAKVGR LQQAFQYSGE MEKRDVRPNV MTCNALLHGI CKAGEIDEAY RYFRKMEEDG IRPNKYSYTM LINKNSDLGK WEEVVELYKE
301: MLDKEIEPDA YTRWALFKHL DKDHASREVE FLEKILRS

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.