CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000093_P001	Maize	cytosol	62.3	89.98
Zm00001d044707_P001	Maize	plastid	83.38	89.47
Zm00001d023422_P001	Maize	plastid	83.51	89.11
EES09272	Sorghum	plastid	74.61	78.4
Os12t0152600-01	Rice	plastid	68.72	73.32
HORVU5Hr1G042300.1	Barley	plastid	66.88	71.67
TraesCS5A01G128400.1	Wheat	plastid	62.83	71.43
TraesCS5D01G136000.1	Wheat	plastid	62.57	71.13
TraesCS5B01G127400.1	Wheat	plastid	62.43	70.98
GSMUA_Achr6P35510_001	Banana	cytosol	47.77	52.07
Bra024554.1-P	Field mustard	cytosol	19.37	43.79
KRH16451	Soybean	plastid	39.01	43.38
KRH18049	Soybean	plastid	38.35	42.65
VIT_01s0011g04390.t01	Wine grape	plastid	39.92	42.48
Bra024552.1-P	Field mustard	cytosol	13.74	41.67
CDY04764	Canola	cytosol	19.24	41.53
CDY21405	Canola	cytosol	22.51	40.66
PGSC0003DMT400078379	Potato	cytosol	36.78	40.61
CDY04754	Canola	cytosol	12.43	39.26
Solyc05g008560.1.1	Tomato	mitochondrion	37.3	37.8
AT1G22960.1	Thale cress	mitochondrion	34.69	36.91
CDY04753	Canola	mitochondrion, plastid	17.28	31.73
KXG40115	Sorghum	cytosol	17.41	30.79
OQU81794	Sorghum	mitochondrion, peroxisome	15.84	30.02
KXG31660	Sorghum	mitochondrion	13.22	29.53
OQU90004	Sorghum	cytosol	17.8	28.63
OQU75844	Sorghum	cytosol	20.29	28.13
EER99880	Sorghum	cytosol	17.28	27.62
OQU87837	Sorghum	plastid	14.14	26.34
EER96725	Sorghum	mitochondrion, plastid	21.34	25.59
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	19.24	24.5
EES10956	Sorghum	mitochondrion	18.72	23.29
OQU83816	Sorghum	mitochondrion	13.35	22.97
KXG39937	Sorghum	cytosol, plastid	23.69	22.8
KXG22891	Sorghum	mitochondrion	15.97	20.85
EES00885	Sorghum	cytosol, mitochondrion	14.79	19.72

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1Z5R581	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:OQU78719	ProteinID:OQU78719	ProteinID:OQU78719.1	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF724	InterPro:Pentatricopeptide_repeat
EnsemblPlantsGene:SORBI_3008G037700	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B8B9AF3	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:3548643..3551221

Molecular Weight (calculated)

84361.2 Da

IEP (calculated)

6.950

GRAVY (calculated)

-0.061

Length

764 amino acids

Sequence
(BLAST)

001: MNGADGVCTS GGSDSAALVG GRSLGRAPST PYGRRNLVDW MRRSHCHRFL LAAAAPSFMA RPVSSIRFFS SSSSSSSLRA LVPPPPPLPL HEENPFAALL
101: ASDPPPPEPL RQVLATGDVH SALRGLPGLA RQLFRWAETT PCGFPRSASA FAAVLVPLAR ANHIRAAYPV SLRALHLGLL LPLVSLLLSA PLSPAPQSLL
201: SLLLRLSTKY SKECTDRDAT PDTCSTLCLS AFHEMASHGV APDVKDCNRV LRVLSDAARW DDICAVHAEM LQLGIEPSIV TYNTLLDSFL KEGRNDKVAM
301: LLKEMETRGS GCLPNDVTHN VVITGLARKG DLEEAAEMVE GMRLSKKASS FTYNPLITGL LAKGFVKKAD DLQLEMENEG IMPTVVTYNA MIHGLLQSGQ
401: VEAAQVKFVE MRAMGLQPDV ITYNSLLNGY CKAGSLKEAL LLFGDLRHAG LAPTVLTYNI LIDGYCRLGD LEEARRLKEE MVEQGCLPDV CTYTILMKGS
501: HNACSLAMAR EFFDEMLSKG LQPDCFAYNT RIRAELTLGA IAKAFRLREV MMLEGISSDT VTYNILIDGL CKTGNLNDAK DLQMKMVHNG LQPDCITYTC
601: LIHAHCERGL LREARKFFKD MISDGLAPSA VTYTVFIHAY CRRGNLYSAY GWFRKMLEEG VEPNEITYNV LIHALCRTGR TQLAYRHFHE MLERGLVPNK
701: YTYTLLIDGN CKEGNWEDAM RFYFEMHQNG IHPDYLTHKA LFKGFDEGHM NHAIEYLENA VLGE

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.