Factsheet for Os12t0152600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000093_P001	Maize	cytosol	56.01	75.8
Zm00001d023422_P001	Maize	plastid	74.16	74.16
HORVU5Hr1G042300.1	Barley	plastid	73.74	74.05
TraesCS5A01G128400.1	Wheat	plastid	69.27	73.81
TraesCS5D01G136000.1	Wheat	plastid	69.13	73.66
TraesCS5B01G127400.1	Wheat	plastid	68.99	73.51
Zm00001d044707_P001	Maize	plastid	72.77	73.17
EES09272	Sorghum	plastid	73.88	72.76
Zm00001d052540_P001	Maize	plastid	72.49	71.98
OQU78719	Sorghum	cytosol	73.32	68.72
GSMUA_Achr6P35510_001	Banana	cytosol	49.3	50.36
KRH16451	Soybean	plastid	42.32	44.1
KRH18049	Soybean	plastid	41.76	43.52
Bra024554.1-P	Field mustard	cytosol	20.25	42.9
VIT_01s0011g04390.t01	Wine grape	plastid	42.6	42.48
CDY04764	Canola	cytosol	20.39	41.24
PGSC0003DMT400078379	Potato	cytosol	39.8	41.19
Bra024552.1-P	Field mustard	cytosol	14.25	40.48
CDY21405	Canola	cytosol	23.88	40.43
CDY04754	Canola	cytosol	13.27	39.26
Solyc05g008560.1.1	Tomato	mitochondrion	40.64	38.59
AT1G22960.1	Thale cress	mitochondrion	35.89	35.79
CDY04753	Canola	mitochondrion, plastid	18.44	31.73
Os04t0477200-01	Rice	endoplasmic reticulum	18.58	29.23
Os06t0152500-00	Rice	plastid	26.54	27.38
Os05t0583950-00	Rice	mitochondrion	15.5	27.07
Os02t0827900-03	Rice	plastid	20.95	25.86
Os09t0417500-01	Rice	mitochondrion	22.07	25.57
Os06t0565000-00	Rice	mitochondrion	24.58	25.36
Os03t0165100-00	Rice	cytosol, mitochondrion	25.56	25.14
Os10t0484300-01	Rice	mitochondrion	20.25	25.09
Os07t0671200-00	Rice	extracellular	18.99	24.68
Os07t0513200-01	Rice	mitochondrion	25.98	24.67
Os04t0463300-01	Rice	cytosol	2.23	22.86
Os10t0363500-00	Rice	endoplasmic reticulum	16.34	22.85
Os03t0201400-02	Rice	cytosol	24.86	22.36
Os11t0607100-01	Rice	mitochondrion	20.39	21.76
Os01t0546700-00	Rice	cytosol	17.04	20.47
Os03t0201200-01	Rice	nucleus	1.82	5.58

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4351524	ProteinID:ABA95832.1	ProteinID:BAF29195.1	ProteinID:BAT15923.1
ProteinID:EAZ19671.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os12g0152600	EnsemblPlants:Os12t0152600-01
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF724	InterPro:Pentatricopeptide_repeat	UniProt:Q2QXL4	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0000681A21	RefSeq:XP_015619721.1	SEG:seg	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os12t0152600-01)

Coordinates

chr12:-:2592552..2594898

Molecular Weight (calculated)

79499.4 Da

IEP (calculated)

7.774

GRAVY (calculated)

-0.038

Length

716 amino acids

Sequence
(BLAST)

001: MLFSIHPCKS QAPAASAAAA AISGLRFVSS SSSSSSTALI PPPRTEESPF ASLLASDPPP PEALREVLAA GDVHAALRGL PGLARQLFRW AEATPRGFPR
101: CASAYAAVLV PLAEAKHLHA AHPVSVRAIH LGLLLPLVSL LLSFPTTVSL HYLLNLLLRL STKFNTRARN PAPSTCSTLC LAAFREMAHH GVPPFIKECN
201: LVLRALRDEA RWDDMRSVYA EMLQLGIEPS IVTYNTLLDS FFREGRVDQA AKLLREMEAR PGGCLPSDVT YNVVINGLAR KGELEKAAQL VDRMRMSKKA
301: SAFTFNPLIT GYFARGSVEK AGALQLEMEN EGIVPTVVTY NTIIHGMFRS GNVEAARMKF VEMRAMGLLP DLITYNSLIN GYCKAGNLKE ALWLFGDLKR
401: AGLAPSVLTY NILLDGYCRL GDLEEARRFK QEMVEQGCQP DVSTYTILMN GSRKVRNLAM VREFFDEMLS KGLQPDCFAY NTRISAELIL GSTSEAFQLT
501: EVMISRGISS DTVTYNIFLD GLCKSGNLKD AYVLWMKMVS DGLQPDCITY TCLIHAHCER GRLREARDIF DGMLVSGLPP SAVTYTVFIH AYCRRGNLYS
601: AYGWFQKMLE EGVRPNEVTY NVLIHALCRM GRTNLAYQHF HEMLERGLSP NKYTYTLLID GNCKEGNWEE AIRLYSEMHQ HGIHPDHCTH NALFKGFDEG
701: QSKHAIQYME NVVLGA

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.