Factsheet for Os03t0165100-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G280500.1	Wheat	plastid	68.41	84.84
TraesCS4A01G023000.1	Wheat	plastid	67.58	83.82
TraesCS4D01G279000.1	Wheat	mitochondrion	73.63	82.59
KXG40115	Sorghum	cytosol	47.12	79.4
Zm00001d027800_P001	Maize	mitochondrion	70.19	78.74
HORVU4Hr1G074200.9	Barley	mitochondrion	73.35	78.3
GSMUA_AchrUn_...	Banana	mitochondrion	41.76	52.87
PGSC0003DMT400024895	Potato	cytosol	32.28	51.31
VIT_06s0009g03510.t01	Wine grape	mitochondrion	41.48	49.59
KRH14574	Soybean	plastid	41.07	46.72
PGSC0003DMT400003372	Potato	mitochondrion	41.07	40.96
Bra005695.1-P	Field mustard	mitochondrion	40.11	39.41
CDY11211	Canola	mitochondrion	39.97	39.27
CDX80791	Canola	mitochondrion	31.59	38.27
AT5G01110.2	Thale cress	cytosol, plastid	39.01	37.52
Os04t0463300-01	Rice	cytosol	3.16	32.86
Os04t0477200-01	Rice	endoplasmic reticulum	19.92	31.87
Os06t0152500-00	Rice	plastid	27.34	28.67
Os05t0583950-00	Rice	mitochondrion	15.93	28.29
Os10t0484300-01	Rice	mitochondrion	20.74	26.12
Os07t0671200-00	Rice	extracellular	19.37	25.59
Os12t0152600-01	Rice	plastid	25.14	25.56
Os07t0513200-01	Rice	mitochondrion	25.82	24.93
Os06t0565000-00	Rice	mitochondrion	23.49	24.64
Os09t0417500-01	Rice	mitochondrion	20.33	23.95
Os02t0827900-03	Rice	plastid	18.82	23.62
Os03t0201400-02	Rice	cytosol	25.69	23.49
Os11t0607100-01	Rice	mitochondrion	19.78	21.46
Os01t0546700-00	Rice	cytosol	16.9	20.64
Os10t0363500-00	Rice	endoplasmic reticulum	13.46	19.14
Os03t0201200-01	Rice	nucleus	0.82	2.58

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0P0VTQ9	ProteinID:BAS82461.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005506
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016705	GO:GO:0016740	GO:GO:0016787
GO:GO:0020037	GO:GO:0043231	GO:GO:0055114	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
EnsemblPlantsGene:Os03g0165100	EnsemblPlants:Os03t0165100-00	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF648	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0003939B1D
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os03t0165100-00)

Coordinates

chr3:-:3501294..3504478

Molecular Weight (calculated)

81032.4 Da

IEP (calculated)

8.091

GRAVY (calculated)

-0.125

Length

728 amino acids

Sequence
(BLAST)

001: MAIPRRLAAA AAAETTKRSA AGLAAALGGS GGKPATADLA AAATAAAAAG RASECQSLLL RMSRRRGACR REIVSSLLGS SPTPQPRVFD LLIRTYTQSR
101: KPREAFEAFR LILDHRVPIP AAASNALLAA LSRAGWPHLA ADAYRLVFSS NSEVNTYTLN IMVHNYCKAL EFDKVDAVIS EMEKRCVFPD VVTHNVMVDA
201: RFRAGDAEAA MALVDSMVSK GLKPGIVTYN SVLKGLCRSG MWDKAWEVFK EMDDFGVAPD VRSFTILIGG FCRVGEIEEA LKIYKEMRHR GIKPDLVSFS
301: CLIGLFARRG KMDHAMAYLR EMRCFGLVPD GVIYTMVIGG FCRAGLMSDA LRVRDEMVGC GCLPDVVTYN TLLNGLCKER RLLDAEGLLN EMRERGVPPD
401: LCTFTTLIHG YCIEGKLDKA LQLFDTMLNQ RLRPDIVTYN TLIDGMCRQG DLDKANDLWD DMHSREIFPN HVTYSILIDS HCEKGQVEDA FGFLDEMINK
501: GILPNIMTYN SIIKGYCRSG NVSKGQKFLQ KMMVNKVSPD LITYNTLIHG YIKEDKMHDA FKLLNMMEKE KVQPDVVTYN MLINGFSVHG NVQEAGWIFE
601: KMCAKGIEPD RYTYMSMING HVTAGNSKEA FQLHDEMLQR GKEKRRAAGT VQFVNIQNSA ESLKQMPMDL KVTCSIYFFA KTQEFAIRGC AFVFGALEKS
701: STPLNFQSCH DTDRRVLLAK ESQSTERD

Best Arabidopsis Sequence Match ( AT5G01110.2 )
(BLAST)

001: MNQTTVKVFK FQFLFSIEIK LSLSQPQKMI VHRIIPSRVK DPLTRFKPLK NLTTSSSPVF EPSSSSSSSS SSASFSVSDS FLVEKICFSL KQGNNNVRNH
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G01110]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.