Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- plastid 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d003397_P001 | Maize | endoplasmic reticulum, extracellular | 77.14 | 11.16 |
| Zm00001d003396_P001 | Maize | endoplasmic reticulum, extracellular | 77.14 | 11.16 |
| TraesCS2A01G336700.1 | Wheat | cytosol | 82.86 | 9.52 |
| TraesCS2D01G326200.1 | Wheat | mitochondrion | 81.43 | 9.36 |
| TraesCS2B01G345200.1 | Wheat | mitochondrion | 80.0 | 9.2 |
| EES10956 | Sorghum | mitochondrion | 78.57 | 8.96 |
| HORVU2Hr1G080860.1 | Barley | plastid | 80.0 | 8.86 |
| KRH17313 | Soybean | mitochondrion | 51.43 | 7.55 |
| Solyc11g011410.1.1 | Tomato | cytosol | 48.57 | 7.08 |
| PGSC0003DMT400034430 | Potato | cytosol | 47.14 | 6.88 |
| GSMUA_Achr6P30640_001 | Banana | mitochondrion, plastid | 58.57 | 6.78 |
| VIT_14s0006g00170.t01 | Wine grape | mitochondrion | 57.14 | 6.76 |
| KRH72966 | Soybean | mitochondrion | 52.86 | 6.02 |
| CDX93490 | Canola | mitochondrion | 48.57 | 5.67 |
| AT1G09680.1 | Thale cress | mitochondrion | 48.57 | 5.6 |
| Bra020001.1-P | Field mustard | mitochondrion | 47.14 | 5.5 |
| CDX94959 | Canola | mitochondrion | 45.71 | 5.26 |
| Os04t0477200-01 | Rice | endoplasmic reticulum | 30.0 | 4.62 |
| Os07t0671200-00 | Rice | extracellular | 28.57 | 3.63 |
| Os06t0152500-00 | Rice | plastid | 34.29 | 3.46 |
| Os05t0583950-00 | Rice | mitochondrion | 20.0 | 3.41 |
| Os03t0165100-00 | Rice | cytosol, mitochondrion | 32.86 | 3.16 |
| Os07t0513200-01 | Rice | mitochondrion | 31.43 | 2.92 |
| Os06t0565000-00 | Rice | mitochondrion | 27.14 | 2.74 |
| Os09t0417500-01 | Rice | mitochondrion | 21.43 | 2.43 |
| Os12t0152600-01 | Rice | plastid | 22.86 | 2.23 |
| Os01t0546700-00 | Rice | cytosol | 18.57 | 2.18 |
| Os03t0201400-02 | Rice | cytosol | 24.29 | 2.14 |
| Os11t0607100-01 | Rice | mitochondrion | 20.0 | 2.09 |
| Os10t0484300-01 | Rice | mitochondrion | 17.14 | 2.08 |
| Os02t0827900-03 | Rice | plastid | 15.71 | 1.9 |
| Os10t0363500-00 | Rice | endoplasmic reticulum | 4.29 | 0.59 |
| Os03t0201200-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os04t0463300-01 | EnsemblPlantsGene:Os04g0463300 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF923 |
| PFAM:PF12854 | ProteinID:BAF14923.1 | ProteinID:BAS89574.1 | TIGRFAMs:TIGR00756 | UniParc:UPI0000DD9102 | UniProt:Q0JCL4 |
| MapMan:35.2 | : | : | : | : | : |
Description
Pentatricopeptide repeat containing protein. (Os04t0463300-01)
Coordinates
chr4:+:23133289..23137358
Molecular Weight (calculated)
7715.4 Da
IEP (calculated)
6.788
GRAVY (calculated)
-0.260
Length
70 amino acids
Sequence
(BLAST)
(BLAST)
1: DMLLNAMINI GVSPDDITYN ILLDGHCKHG KVTDIEELKS AKGTVPDLGV YTSIVGEIVK KKTTKTYHDR
001: MFRIEILRCT LSQSHPQRFS RASFLLSTWY SQESVSAADN DDDPVLVKLS VAIRDSYKDP PLEFSSFTDC PSIRKVLPSL SVHHVVDLIN HNPLSLPQRS
101: IFAFFKFISS QPGFRFTVET YFVLARFLAV HEMFTEAQSL IELVVSRKGK NSASSVFISL VEMRVTPMCG FLVDALMITY TDLGFIPDAI QCFRLSRKHR
201: FDVPIRGCGN LLDRMMKLNP TGTIWGFYME ILDAGFPLNV YVFNILMNKF CKEGNISDAQ KVFDEITKRS LQPTVVSFNT LINGYCKVGN LDEGFRLKHQ
301: MEKSRTRPDV FTYSALINAL CKENKMDGAH GLFDEMCKRG LIPNDVIFTT LIHGHSRNGE IDLMKESYQK MLSKGLQPDI VLYNTLVNGF CKNGDLVAAR
401: NIVDGMIRRG LRPDKITYTT LIDGFCRGGD VETALEIRKE MDQNGIELDR VGFSALVCGM CKEGRVIDAE RALREMLRAG IKPDDVTYTM MMDAFCKKGD
501: AQTGFKLLKE MQSDGHVPSV VTYNVLLNGL CKLGQMKNAD MLLDAMLNIG VVPDDITYNT LLEGHHRHAN SSKRYIQKPE IGIVADLASY KSIVNELDRA
601: SKDHRNR
101: IFAFFKFISS QPGFRFTVET YFVLARFLAV HEMFTEAQSL IELVVSRKGK NSASSVFISL VEMRVTPMCG FLVDALMITY TDLGFIPDAI QCFRLSRKHR
201: FDVPIRGCGN LLDRMMKLNP TGTIWGFYME ILDAGFPLNV YVFNILMNKF CKEGNISDAQ KVFDEITKRS LQPTVVSFNT LINGYCKVGN LDEGFRLKHQ
301: MEKSRTRPDV FTYSALINAL CKENKMDGAH GLFDEMCKRG LIPNDVIFTT LIHGHSRNGE IDLMKESYQK MLSKGLQPDI VLYNTLVNGF CKNGDLVAAR
401: NIVDGMIRRG LRPDKITYTT LIDGFCRGGD VETALEIRKE MDQNGIELDR VGFSALVCGM CKEGRVIDAE RALREMLRAG IKPDDVTYTM MMDAFCKKGD
501: AQTGFKLLKE MQSDGHVPSV VTYNVLLNGL CKLGQMKNAD MLLDAMLNIG VVPDDITYNT LLEGHHRHAN SSKRYIQKPE IGIVADLASY KSIVNELDRA
601: SKDHRNR
Arabidopsis Description
Putative pentatricopeptide repeat-containing protein At1g09680 [Source:UniProtKB/Swiss-Prot;Acc:O04491]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.