CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17313	Soybean	mitochondrion	70.24	90.57
VIT_14s0006g00170.t01	Wine grape	mitochondrion	57.89	60.14
Solyc11g011410.1.1	Tomato	cytosol	44.55	57.08
PGSC0003DMT400034430	Potato	cytosol	44.55	57.08
Os04t0463300-01	Rice	cytosol	6.02	52.86
Bra020001.1-P	Field mustard	mitochondrion	51.22	52.5
CDX93490	Canola	mitochondrion	51.22	52.5
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	51.38	52.23
AT1G09680.1	Thale cress	mitochondrion	51.06	51.73
CDX94959	Canola	mitochondrion	50.24	50.82
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	38.7	49.17
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	38.7	49.17
TraesCS2B01G345200.1	Wheat	mitochondrion	44.23	44.66
TraesCS2A01G336700.1	Wheat	cytosol	44.06	44.5
TraesCS2D01G326200.1	Wheat	mitochondrion	43.74	44.17
EES10956	Sorghum	mitochondrion	43.74	43.81
HORVU2Hr1G080860.1	Barley	plastid	43.9	42.72
KRH29211	Soybean	cytosol	28.46	30.02
KRH44246	Soybean	cytosol	23.25	28.66
KRH20741	Soybean	cytosol	26.34	27.6
KRH24548	Soybean	mitochondrion	27.8	27.45
KRH13392	Soybean	cytosol	26.18	27.43
KRH50360	Soybean	cytosol, extracellular, plastid	24.72	27.34
KRH33556	Soybean	cytosol	9.27	27.27
KRH51875	Soybean	cytosol	24.72	26.76
KRH02112	Soybean	extracellular, mitochondrion	23.58	26.75
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	18.86	25.0
KRH14574	Soybean	plastid	25.53	24.53
KRG99196	Soybean	cytosol	20.65	24.05
KRH29553	Soybean	mitochondrion	17.07	23.97
KRH56553	Soybean	plastid	23.25	22.84
KRG90304	Soybean	cytosol	20.81	22.82
KRH16451	Soybean	plastid	25.04	22.42
KRH45820	Soybean	cytosol, mitochondrion, plastid	26.99	22.37
KRH18049	Soybean	plastid	24.88	22.27
KRH58559	Soybean	plastid	21.14	22.18
KRH42458	Soybean	plastid	25.85	21.17
KRG89236	Soybean	plastid	26.67	21.08
KRH54581	Soybean	mitochondrion	17.72	20.49
KRH49758	Soybean	plastid	23.41	20.45
KRH34922	Soybean	cytosol	14.96	20.04
KRH40170	Soybean	mitochondrion	22.44	19.91
KRG93154	Soybean	plastid	23.58	15.18

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100798451	MapMan:35.1	EMBL:ACUP02001259	EnsemblPlantsGene:GLYMA_02G243500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1JHV1	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH72966	ProteinID:KRH72966	ProteinID:KRH72966.1
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF923	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002337921	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:43159474..43161766

Molecular Weight (calculated)

68491.7 Da

IEP (calculated)

8.287

GRAVY (calculated)

-0.087

Length

615 amino acids

Sequence
(BLAST)

001: MAMAMVMTLK PKLWKTKTSP HCLRLRLCSC THLLPFSSWS HFPYKDHDLL CEISEAINDS ETKHEKGYSE NPRLKRILPS LTPRHVSKLI TLNPLCLPPS
101: SLLSFFNHLA SRPPFRHTLH SYCTMLHFLC LHRMLPQAHS LVSFLVSRKG TNSASTLFSS ILRTMPRHHH HHHSVGLVFD ALISAYVDSG FTPDAVQCFR
201: LVTKNKFPVP IRGCENLLRR VVRLRPVEIE RSWALYLEVL DSGYPPKIYF FNVLMHGFCK AGDVGNARLV FDEIPKRGLR PTVVSFNTLI SGCCKSGDVE
301: EGFRLKGVME SEGVCPDVFT FSALINGLCK EGRLDEGSLL FDEMCGRGLV PNGVTFTTLI DGQCKGGKVD LALKNFQMML AQGVRPDLVT YNALINGLCK
401: VGDLKEARRL VNEMTASGLK PDKITFTTLI DGCCKDGDME SALEIKRRMV EEGIELDDVA FTALISGLCR EGRVHDAGRM LTDMLSAGFK PDDPTYTMVI
501: DCFCKKGDVK MGFKLLKEMQ SDGHVPGVVT YNALMNGLCK QGQMKNAKML LDAMLNVGVA PNDITYNILL DGHSKHGSSV DVDIFNSEKG LVTDYASYTA
601: LVNESSKTSK DHLKR

Best Arabidopsis Sequence Match ( AT1G09680.1 )
(BLAST)

001: MFRIEILRCT LSQSHPQRFS RASFLLSTWY SQESVSAADN DDDPVLVKLS VAIRDSYKDP PLEFSSFTDC PSIRKVLPSL SVHHVVDLIN HNPLSLPQRS
101: IFAFFKFISS QPGFRFTVET YFVLARFLAV HEMFTEAQSL IELVVSRKGK NSASSVFISL VEMRVTPMCG FLVDALMITY TDLGFIPDAI QCFRLSRKHR
201: FDVPIRGCGN LLDRMMKLNP TGTIWGFYME ILDAGFPLNV YVFNILMNKF CKEGNISDAQ KVFDEITKRS LQPTVVSFNT LINGYCKVGN LDEGFRLKHQ
301: MEKSRTRPDV FTYSALINAL CKENKMDGAH GLFDEMCKRG LIPNDVIFTT LIHGHSRNGE IDLMKESYQK MLSKGLQPDI VLYNTLVNGF CKNGDLVAAR
401: NIVDGMIRRG LRPDKITYTT LIDGFCRGGD VETALEIRKE MDQNGIELDR VGFSALVCGM CKEGRVIDAE RALREMLRAG IKPDDVTYTM MMDAFCKKGD
501: AQTGFKLLKE MQSDGHVPSV VTYNVLLNGL CKLGQMKNAD MLLDAMLNIG VVPDDITYNT LLEGHHRHAN SSKRYIQKPE IGIVADLASY KSIVNELDRA
601: SKDHRNR

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At1g09680 [Source:UniProtKB/Swiss-Prot;Acc:O04491]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.