Factsheet for TraesCS2D01G326200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G336700.1	Wheat	cytosol	95.07	95.07
TraesCS2B01G345200.1	Wheat	mitochondrion	94.58	94.58
HORVU2Hr1G080860.1	Barley	plastid	93.76	90.35
Os04t0463300-01	Rice	cytosol	9.36	81.43
EES10956	Sorghum	mitochondrion	73.89	73.29
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	57.96	72.93
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	57.96	72.93
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	49.92	50.25
PGSC0003DMT400034430	Potato	cytosol	35.8	45.42
Solyc11g011410.1.1	Tomato	cytosol	35.14	44.58
VIT_14s0006g00170.t01	Wine grape	mitochondrion	43.19	44.43
KRH72966	Soybean	mitochondrion	44.17	43.74
KRH17313	Soybean	mitochondrion	33.66	42.98
Bra020001.1-P	Field mustard	mitochondrion	41.54	42.17
CDX93490	Canola	mitochondrion	41.54	42.17
CDX94959	Canola	mitochondrion	41.22	41.28
AT1G09680.1	Thale cress	mitochondrion	39.74	39.87
TraesCS2D01G336100.1	Wheat	plastid	23.97	27.86
TraesCS3D01G353400.1	Wheat	cytosol	18.72	27.8
TraesCS1D01G157200.1	Wheat	mitochondrion	23.81	25.26
TraesCS2D01G324100.1	Wheat	plastid	20.69	25.1
TraesCS6D01G355100.1	Wheat	plastid	23.48	23.95
TraesCS2D01G115600.1	Wheat	cytosol, plastid	22.5	23.42
TraesCS2D01G229300.1	Wheat	mitochondrion	28.41	23.19
TraesCS3D01G203500.2	Wheat	cytosol, mitochondrion	21.67	23.04
TraesCS5D01G136000.1	Wheat	plastid	24.63	22.32
TraesCS7D01G103900.1	Wheat	plastid	25.45	22.3
TraesCS7D01G362900.1	Wheat	mitochondrion	22.33	21.97
TraesCS4D01G279000.1	Wheat	mitochondrion	22.99	21.57
TraesCS7D01G134400.2	Wheat	mitochondrion	21.67	19.7
TraesCS4D01G259600.1	Wheat	cytosol	24.14	18.63
TraesCS5D01G237900.1	Wheat	plastid	18.88	17.37

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF923
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS2D01G326200	EnsemblPlants:TraesCS2D01G326200.1	SEG:seg

Description

No Description!

Coordinates

chr2D:+:419779002..419780831

Molecular Weight (calculated)

66219.3 Da

IEP (calculated)

8.516

GRAVY (calculated)

-0.010

Length

609 amino acids

Sequence
(BLAST)

001: MRRALRHRPR LQPPAQTPPA PTSPLPWYAA PRAPPSHSPS TTEADPLIVA ASEVALTLPV HPAPLPATAP APLLRLLPAF TSAHFLSILR SNPLSLPPLP
101: LLSLFRLLLL ASPPGLFRHT PSSFLSMSHL LLLHRLPDLA RPLLRLLVSR LGRSSPPRLL PLLVPAASPG DPAPLVSELA AAYADEGLLA DACSLVLLAL
201: RGGTRLPPPV CFGLMSRLPT TPEAYAFYLQ LLDAGMTPEV RQFNVLMRDF VRLGDLASAR KVFDEMRTRG VQPTVVSFNT LISGMCRARD LDGVDGLYKG
301: MAQMGITPDA YTYSALIKGL SSSGRMEDAT MMFGEMRERG VKPNAIVFTT LIDAHCKDGN VKAGMDLYQD MRARGVMPDL VAYNALVNGL CRARNFEAAE
401: CIVEEMRGTG LKPDKMTYTT LIDGSCKDGK LDTAMDIKQK MAEEEVALDE VTYTALISGL SKAGRPVDAE RVLVEMMEAG LEPDNTTYTM VIDAFCRKGD
501: VKTGFKLLKE MQNKGRKPGV VTYNVIMSGL CKLGQLKNAD MLLNAMLNIG VSPDDITYNI LLDGQCKHGK VTDSEELKSA TGMVPDFGVY TSLISELVKK
601: KPAKSYHDR

Best Arabidopsis Sequence Match ( AT1G09680.1 )
(BLAST)

001: MFRIEILRCT LSQSHPQRFS RASFLLSTWY SQESVSAADN DDDPVLVKLS VAIRDSYKDP PLEFSSFTDC PSIRKVLPSL SVHHVVDLIN HNPLSLPQRS
101: IFAFFKFISS QPGFRFTVET YFVLARFLAV HEMFTEAQSL IELVVSRKGK NSASSVFISL VEMRVTPMCG FLVDALMITY TDLGFIPDAI QCFRLSRKHR
201: FDVPIRGCGN LLDRMMKLNP TGTIWGFYME ILDAGFPLNV YVFNILMNKF CKEGNISDAQ KVFDEITKRS LQPTVVSFNT LINGYCKVGN LDEGFRLKHQ
301: MEKSRTRPDV FTYSALINAL CKENKMDGAH GLFDEMCKRG LIPNDVIFTT LIHGHSRNGE IDLMKESYQK MLSKGLQPDI VLYNTLVNGF CKNGDLVAAR
401: NIVDGMIRRG LRPDKITYTT LIDGFCRGGD VETALEIRKE MDQNGIELDR VGFSALVCGM CKEGRVIDAE RALREMLRAG IKPDDVTYTM MMDAFCKKGD
501: AQTGFKLLKE MQSDGHVPSV VTYNVLLNGL CKLGQMKNAD MLLDAMLNIG VVPDDITYNT LLEGHHRHAN SSKRYIQKPE IGIVADLASY KSIVNELDRA
601: SKDHRNR

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At1g09680 [Source:UniProtKB/Swiss-Prot;Acc:O04491]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.