Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G045400.1 | Wheat | plastid | 91.89 | 96.8 |
| HORVU4Hr1G070310.1 | Barley | plastid | 96.2 | 90.79 |
| Os03t0201400-02 | Rice | cytosol | 83.52 | 82.79 |
| KXG39937 | Sorghum | cytosol, plastid | 80.35 | 79.85 |
| Zm00001d028107_P001 | Maize | nucleus | 71.74 | 79.27 |
| GSMUA_Achr1P22450_001 | Banana | mitochondrion | 41.57 | 58.57 |
| VIT_13s0019g03690.t01 | Wine grape | cytosol | 31.81 | 51.43 |
| KRH34922 | Soybean | cytosol | 28.39 | 48.8 |
| PGSC0003DMT400015805 | Potato | endoplasmic reticulum, extracellular | 35.36 | 45.66 |
| PGSC0003DMT400015807 | Potato | endoplasmic reticulum, extracellular | 35.36 | 45.66 |
| Solyc01g111470.2.1 | Tomato | plastid | 40.56 | 43.01 |
| Bra002000.1-P | Field mustard | cytosol | 16.48 | 42.9 |
| CDY31404 | Canola | cytosol | 36.88 | 39.27 |
| CDX71311 | Canola | cytosol | 34.35 | 38.77 |
| AT2G16880.1 | Thale cress | cytosol | 36.38 | 38.63 |
| TraesCS2D01G336100.1 | Wheat | plastid | 19.39 | 29.2 |
| TraesCS7D01G103900.1 | Wheat | plastid | 24.59 | 27.91 |
| TraesCS4D01G279000.1 | Wheat | mitochondrion | 22.69 | 27.58 |
| TraesCS3D01G353400.1 | Wheat | cytosol | 13.43 | 25.85 |
| TraesCS2D01G229300.1 | Wheat | mitochondrion | 24.08 | 25.47 |
| TraesCS5D01G136000.1 | Wheat | plastid | 21.67 | 25.45 |
| TraesCS2D01G115600.1 | Wheat | cytosol, plastid | 18.38 | 24.79 |
| TraesCS1D01G157200.1 | Wheat | mitochondrion | 17.87 | 24.56 |
| TraesCS2D01G324100.1 | Wheat | plastid | 15.59 | 24.5 |
| TraesCS2D01G326200.1 | Wheat | mitochondrion | 18.63 | 24.14 |
| TraesCS7D01G134400.2 | Wheat | mitochondrion | 20.15 | 23.73 |
| TraesCS3D01G203500.2 | Wheat | cytosol, mitochondrion | 17.11 | 23.56 |
| TraesCS6D01G355100.1 | Wheat | plastid | 17.74 | 23.45 |
| TraesCS7D01G362900.1 | Wheat | mitochondrion | 18.12 | 23.1 |
| TraesCS5D01G237900.1 | Wheat | plastid | 18.76 | 22.36 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G259600.1 | EnsemblPlantsGene:TraesCS4D01G259600 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PFAM:PF01535 | PFAM:PF12854 |
| PFAM:PF13041 | PFscan:PS51375 | SEG:seg | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | MapMan:35.1 |
Description
No Description!
Coordinates
chr4D:-:428947100..428949469
Molecular Weight (calculated)
86733.1 Da
IEP (calculated)
7.566
GRAVY (calculated)
-0.142
Length
789 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTPPSTSAS AATASDPDSA LVAAVADALV SASRLPAPVP MPTLLAAYLP RLTASHHPRV LAVAASKPAL ASPEPLLAYR SFLSPPSCLP SLLPLLPVLP
101: YRHLFPLLLS FVPLDPLRHL HRHLLGHLPS TPLADAALCA YSRLRLPHLA AQLLHSLRRR IRVRPSLQAA NAVLSALARS PSTSPQASLD AFRSLIALRL
201: HPNHYTFNLL VHTHCSKGTL ADALATLSTM QGFGLSPDAV TYNTLLHAHC RKGMLGEART LLARMKKEGI MPTRPTYNTL VSAYAKLGWI KQATKVLEAM
301: TANGLEPDLW TYNVLIAGLC QAEKVDEAFR LKDEMERLGT LLPDVVTHNT LADACFKWRC SSDALRLLEE MREKGVKPTL VTHNIVIKGL CKDGELEEAL
401: GCFKKMADEG LAPDVITYNT LIDAYCKAGN VAKAFALMDE MVGRGLKLDT FTLNTVLYNL CKEKRYEEAQ GLLQSPSQRG FVPNEVSYGT VMAAYFNEYN
501: PEPALRLWDE MIQRKLTPTI STYNTLIKGL GRMGRLKEAI DKLNELMEKG LVPDDTTYNI VIHAYCKEGD LENAFQFHNK MVENSFKPDV VTCNTLMNGL
601: CLQGKLDKAM KLFDSWVEKG KKVDVITYNT LIHAMCKNGD VDAALQFFAD MEVRGLQADA FTYNVVLSAL SEAGRPEEAQ SMLHKLSESG KLSRSFSSPL
701: LKPSPVDETE SGKDHEGNTE EETGGNPQDS ALEAYTKRVN ELCTGGQFKE AKAILDEMMQ KGMSVDSSTY ITLMEGLIKR QKRQTHAAG
101: YRHLFPLLLS FVPLDPLRHL HRHLLGHLPS TPLADAALCA YSRLRLPHLA AQLLHSLRRR IRVRPSLQAA NAVLSALARS PSTSPQASLD AFRSLIALRL
201: HPNHYTFNLL VHTHCSKGTL ADALATLSTM QGFGLSPDAV TYNTLLHAHC RKGMLGEART LLARMKKEGI MPTRPTYNTL VSAYAKLGWI KQATKVLEAM
301: TANGLEPDLW TYNVLIAGLC QAEKVDEAFR LKDEMERLGT LLPDVVTHNT LADACFKWRC SSDALRLLEE MREKGVKPTL VTHNIVIKGL CKDGELEEAL
401: GCFKKMADEG LAPDVITYNT LIDAYCKAGN VAKAFALMDE MVGRGLKLDT FTLNTVLYNL CKEKRYEEAQ GLLQSPSQRG FVPNEVSYGT VMAAYFNEYN
501: PEPALRLWDE MIQRKLTPTI STYNTLIKGL GRMGRLKEAI DKLNELMEKG LVPDDTTYNI VIHAYCKEGD LENAFQFHNK MVENSFKPDV VTCNTLMNGL
601: CLQGKLDKAM KLFDSWVEKG KKVDVITYNT LIHAMCKNGD VDAALQFFAD MEVRGLQADA FTYNVVLSAL SEAGRPEEAQ SMLHKLSESG KLSRSFSSPL
701: LKPSPVDETE SGKDHEGNTE EETGGNPQDS ALEAYTKRVN ELCTGGQFKE AKAILDEMMQ KGMSVDSSTY ITLMEGLIKR QKRQTHAAG
001: MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At2g16880 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.