Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002000.1-P | Field mustard | cytosol | 34.05 | 83.5 |
| CDX71311 | Canola | cytosol | 78.33 | 83.26 |
| CDY31404 | Canola | cytosol | 82.5 | 82.73 |
| VIT_13s0019g03690.t01 | Wine grape | cytosol | 31.76 | 48.36 |
| Solyc01g111470.2.1 | Tomato | plastid | 48.18 | 48.12 |
| PGSC0003DMT400015807 | Potato | endoplasmic reticulum, extracellular | 38.63 | 46.97 |
| PGSC0003DMT400015805 | Potato | endoplasmic reticulum, extracellular | 38.63 | 46.97 |
| KRH34922 | Soybean | cytosol | 27.46 | 44.44 |
| GSMUA_Achr1P22450_001 | Banana | mitochondrion | 31.22 | 41.43 |
| TraesCS4A01G045400.1 | Wheat | plastid | 38.22 | 37.92 |
| KXG39937 | Sorghum | cytosol, plastid | 39.7 | 37.15 |
| TraesCS4D01G259600.1 | Wheat | cytosol | 38.63 | 36.38 |
| Zm00001d028107_P001 | Maize | nucleus | 34.05 | 35.43 |
| Os03t0201400-02 | Rice | cytosol | 37.82 | 35.3 |
| HORVU4Hr1G070310.1 | Barley | plastid | 38.76 | 34.45 |
| AT2G15630.1 | Thale cress | mitochondrion | 22.07 | 26.16 |
| AT4G11690.1 | Thale cress | endoplasmic reticulum | 19.11 | 25.09 |
| AT5G39710.1 | Thale cress | mitochondrion | 23.42 | 23.29 |
| AT5G38730.1 | Thale cress | cytosol | 18.57 | 23.15 |
| AT1G11710.1 | Thale cress | mitochondrion | 20.46 | 23.14 |
| AT5G01110.2 | Thale cress | cytosol, plastid | 23.55 | 23.12 |
| AT4G19890.1 | Thale cress | plastid | 21.53 | 22.82 |
| AT1G22960.1 | Thale cress | mitochondrion | 21.8 | 22.56 |
| AT4G26680.1 | Thale cress | mitochondrion | 15.61 | 22.26 |
| AT2G02150.1 | Thale cress | mitochondrion, plastid | 22.34 | 21.81 |
| AT1G09680.1 | Thale cress | mitochondrion | 17.77 | 21.75 |
| AT1G05670.3 | Thale cress | mitochondrion | 21.67 | 21.73 |
| AT2G28050.1 | Thale cress | cytosol, plastid | 13.32 | 21.43 |
| AT5G61400.1 | Thale cress | mitochondrion | 18.71 | 21.25 |
| AT1G09820.1 | Thale cress | mitochondrion, plastid | 17.23 | 21.12 |
| AT2G01740.1 | Thale cress | cytosol | 15.75 | 20.93 |
| AT2G32630.1 | Thale cress | mitochondrion, plastid | 17.36 | 20.67 |
| AT2G19280.1 | Thale cress | mitochondrion | 17.77 | 19.05 |
| AT5G40400.2 | Thale cress | cytosol | 17.23 | 18.8 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:816189 | ProteinID:AAC64219.1 | ProteinID:AEC06546.1 | ArrayExpress:AT2G16880 |
| EnsemblPlantsGene:AT2G16880 | RefSeq:AT2G16880 | TAIR:AT2G16880 | RefSeq:AT2G16880-TAIR-G | EnsemblPlants:AT2G16880.1 | TAIR:AT2G16880.1 |
| EMBL:AY072079 | EMBL:AY096663 | Unigene:At.40223 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 |
| RefSeq:NP_179280.1 | PFAM:PF13041 | PFAM:PF13812 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF993 |
| InterPro:Pentatricopeptide_repeat | UniProt:Q9ZVX5 | SUPFAM:SSF48452 | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI00000A893F | SEG:seg | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein At2g16880 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX5]
Coordinates
chr2:-:7312051..7314576
Molecular Weight (calculated)
83772.8 Da
IEP (calculated)
6.420
GRAVY (calculated)
-0.205
Length
743 amino acids
Sequence
(BLAST)
(BLAST)
001: MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.