Factsheet for Os03t0201400-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G259600.1	Wheat	cytosol	82.79	83.52
TraesCS4A01G045400.1	Wheat	plastid	78.39	83.31
KXG39937	Sorghum	cytosol, plastid	80.28	80.48
HORVU4Hr1G070310.1	Barley	plastid	83.04	79.07
Zm00001d028107_P001	Maize	nucleus	70.1	78.15
GSMUA_Achr1P22450_001	Banana	mitochondrion	41.46	58.93
VIT_13s0019g03690.t01	Wine grape	cytosol	32.04	52.25
KRH34922	Soybean	cytosol	28.89	50.11
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	34.67	45.17
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	34.67	45.17
Bra002000.1-P	Field mustard	cytosol	16.21	42.57
Solyc01g111470.2.1	Tomato	plastid	39.45	42.2
CDY31404	Canola	cytosol	36.43	39.14
CDX71311	Canola	cytosol	33.92	38.63
AT2G16880.1	Thale cress	cytosol	35.3	37.82
Os04t0477200-01	Rice	endoplasmic reticulum	18.09	31.65
Os06t0152500-00	Rice	plastid	25.63	29.39
Os02t0827900-03	Rice	plastid	19.47	26.72
Os03t0165100-00	Rice	cytosol, mitochondrion	23.49	25.69
Os10t0484300-01	Rice	mitochondrion	18.34	25.26
Os05t0583950-00	Rice	mitochondrion	12.94	25.12
Os12t0152600-01	Rice	plastid	22.36	24.86
Os07t0671200-00	Rice	extracellular	17.09	24.68
Os11t0607100-01	Rice	mitochondrion	20.73	24.59
Os04t0463300-01	Rice	cytosol	2.14	24.29
Os10t0363500-00	Rice	endoplasmic reticulum	15.45	24.02
Os09t0417500-01	Rice	mitochondrion	18.59	23.95
Os06t0565000-00	Rice	mitochondrion	20.85	23.92
Os07t0513200-01	Rice	mitochondrion	22.61	23.87
Os01t0546700-00	Rice	cytosol	17.59	23.49
Os03t0201200-01	Rice	nucleus	5.53	18.88

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:9271741	ProteinID:ABF94502.1	ProteinID:BAH92030.1	ProteinID:BAS82823.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os03g0201400	EnsemblPlants:Os03t0201400-02	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF871	InterPro:Pentatricopeptide_repeat
UniProt:Q10QC8	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000DB48BE	RefSeq:XP_015632829.1
RefSeq:XP_015632831.1	RefSeq:XP_015632832.1	RefSeq:XP_015632833.1	RefSeq:XP_015632834.1	RefSeq:XP_015632835.1	RefSeq:XP_015632836.1
RefSeq:XP_015632837.1	RefSeq:XP_015632838.1	RefSeq:XP_015632839.1	RefSeq:XP_015632840.1	RefSeq:XP_015632841.1	RefSeq:XP_015632842.1
RefSeq:XP_015632843.1	SEG:seg	:	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os03t0201400-01);Pentatricopeptide repeat domain containing protein. (Os03t0201400-02)

Coordinates

chr3:+:5304947..5314273

Molecular Weight (calculated)

87786.5 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.125

Length

796 amino acids

Sequence
(BLAST)

001: MDTPPSAAAA TATAVASDSD CDSALVADVA EALVSASRLP EPPPIPALLA LYLPRLAASH HPRVLSLAAS HPGLASPDLL LAYRRHLSPP SCLPSLVPLL
101: PVLPYRHLLP LLLSFVPLDP LRHLHRHLLA HLPTSPLADA ALSAYARLRL PHLAAQLLHS LRRRRGVRPS LQAANAVLSA LSRSPSTLPQ ASLDVFRSLI
201: ELRLHPNHYT FNLLVHTHCS KGTLADALAT LSTMQGFGLS PDAVTYNTLL NAHCRKGMLG EARALLARMK RDGIAPTQPT YNTLVSAFAR LGWIKQATKV
301: VESMTAYGFE PDLRTYNVLA VGLCQAGKVD EAFRLKDEME RLSTALPDVV TYNTLVDACF KWRCSSDALR LLEEMRDKGV KPTLVTHNIV VKSLCKEGKL
401: EEALGKLEKI AEEGLAPDVI TYNTLIDAYC KAGNVAKAFT LMDEMVGKGL KMDTFTLNTV LYNLCKMKRY EDAEELLHSP PQRGFVPDEV SYGTVMAAYF
501: KEYNPEPALR LWDQMIERKL IPSISTYNTL IKGLCRMERL KEAIDKLNEL VEKGLVPDET TYNIIIHAYC KEGDLENAFR FHNKMVENSF KPDVVTCNTL
601: MNGLCLHGKL DKALKLFESW VEKGKKVDVI TYNTLIQSMC KVGDVDTALH FFDDMEVKGL QPDAFTYNVV LSALSEAGRS EEAHNMLHKL ADSGKLSQSF
701: ACPLLKPSSA DEADVKEHEG KPEAESSEKA QDNALETYME RLNGLCTGGQ LKEAKAVLDE MMQKGMPVDS STYITLMEGL IKRQKRQTHA AGQSTL

Best Arabidopsis Sequence Match ( AT2G16880.1 )
(BLAST)

001: MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g16880 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.