Factsheet for GSMUA_Achr1P22450_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g03690.t01	Wine grape	cytosol	43.04	49.39
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	49.29	45.17
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	49.29	45.17
KRH34922	Soybean	cytosol	36.25	44.23
TraesCS4A01G045400.1	Wheat	plastid	58.39	43.66
KXG39937	Sorghum	cytosol, plastid	59.64	42.07
TraesCS4D01G259600.1	Wheat	cytosol	58.57	41.57
Os03t0201400-02	Rice	cytosol	58.93	41.46
Bra002000.1-P	Field mustard	cytosol	21.96	40.59
HORVU4Hr1G070310.1	Barley	plastid	58.39	39.11
Zm00001d028107_P001	Maize	nucleus	49.64	38.94
Solyc01g111470.2.1	Tomato	plastid	47.32	35.62
CDY31404	Canola	cytosol	43.93	33.2
CDX71311	Canola	cytosol	40.36	32.33
AT2G16880.1	Thale cress	cytosol	41.43	31.22
GSMUA_AchrUn_...	Banana	mitochondrion	27.68	26.96
GSMUA_Achr8P16100_001	Banana	cytosol	13.04	26.74
GSMUA_Achr1P06500_001	Banana	cytosol	23.04	25.29
GSMUA_Achr1P12600_001	Banana	extracellular	14.82	23.78
GSMUA_Achr11P...	Banana	cytosol	19.11	21.79
GSMUA_Achr3P04340_001	Banana	cytosol	23.39	19.91
GSMUA_Achr8P04810_001	Banana	mitochondrion	25.54	19.67
GSMUA_Achr1P17710_001	Banana	cytosol	20.71	18.99
GSMUA_Achr8P03570_001	Banana	mitochondrion	22.5	18.67
GSMUA_Achr6P35510_001	Banana	cytosol	23.04	18.4
GSMUA_Achr6P34120_001	Banana	cytosol	16.07	18.11
GSMUA_Achr3P01360_001	Banana	mitochondrion	16.43	17.73
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	18.75	17.36
GSMUA_Achr1P12220_001	Banana	mitochondrion	21.07	16.95
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	20.36	16.1
GSMUA_AchrUn_...	Banana	cytosol	12.86	15.75
GSMUA_Achr5P09880_001	Banana	mitochondrion	16.61	13.92

Protein Annotations

EnsemblPlants:GSMUA_Achr1P22450_001	EnsemblPlants:GSMUA_Achr1T22450_001	EnsemblPlantsGene:GSMUA_Achr1G22450_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
UniParc:UPI000294C1AF	UniProt:M0S253	MapMan:35.1	:	:	:

Description

Putative Pentatricopeptide repeat-containing protein At2g16880 [Source:GMGC_GENE;Acc:GSMUA_Achr1G22450_001]

Coordinates

chr1:-:16948328..16950220

Molecular Weight (calculated)

62611.0 Da

IEP (calculated)

6.287

GRAVY (calculated)

-0.198

Length

560 amino acids

Sequence
(BLAST)

001: MRRRRLRPSL FTSNSLLSSL VRSPTISSSL PLSIFHDMVA LGVSPNVNTF NILIHGLCSR AQFTDALALF PTMAGFGCTP DTITYNTILD GYCKKGMLKE
101: ARDLLAEMKA KDVPPNRSTY NTLVAAYCRL GWLKEATMAI ELMTASNFLP DLWTYNMLVA GLCRDGRIDE AFRLKDEMEK LCLSPDVITY NTLINGCFQE
201: GKMEEAVASL RKMEEEGLSP DLITYNTLIS SYCKASEMGK AFDLMDEMVG RGLKMDTFTL NTVLHNLCKE KRFDEACKLL HKMNEKKIMP GVTTYNTVIG
301: GLCRSGRTEQ AIKMLNKLVE SGLVPDETTY NTIINGFCRE GDLEKAFQFH NQMVNDSFKP NVITCNILMN GLCNDGQVEK ALRFFESWVS KGKKVDVITY
401: NTLIKGLCKE GKVDAAMELF ADMEEKGLQS DAYSYNVVLC ALSEAGRSEE AQNTLSKMVE KGILPEQFTF PLSSEVSSIM GTGKEQEMTP NVFREEDSKG
501: SSDTSYTQHI KELCNSGKFK EAKLVLDEMM QTGVPVNSLT YITLMEGFIK RQKRLTKAAV

Best Arabidopsis Sequence Match ( AT2G16880.1 )
(BLAST)

001: MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g16880 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.