Factsheet for GSMUA_AchrUn_randomP24540_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P06500_001	Banana	cytosol	31.73	28.43
GSMUA_Achr8P16100_001	Banana	cytosol	15.97	26.74
GSMUA_Achr1P12600_001	Banana	extracellular	19.04	24.93
GSMUA_Achr11P...	Banana	cytosol	21.66	20.16
GSMUA_AchrUn_...	Banana	mitochondrion	23.85	18.96
GSMUA_Achr6P34120_001	Banana	cytosol	19.04	17.5
GSMUA_Achr8P04810_001	Banana	mitochondrion	27.13	17.06
GSMUA_Achr3P01360_001	Banana	mitochondrion	19.26	16.96
GSMUA_Achr1P12220_001	Banana	mitochondrion	22.76	14.94
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	19.69	14.88
GSMUA_Achr1P17710_001	Banana	cytosol	19.26	14.4
GSMUA_Achr6P35510_001	Banana	cytosol	21.88	14.27
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	21.66	13.98
GSMUA_Achr8P03570_001	Banana	mitochondrion	20.13	13.63
GSMUA_Achr5P09880_001	Banana	mitochondrion	19.91	13.62
GSMUA_Achr1P22450_001	Banana	mitochondrion	15.75	12.86
GSMUA_Achr3P04340_001	Banana	cytosol	17.29	12.01

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP24540_001	EnsemblPlants:GSMUA_AchrUn_randomT24540_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG24540_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149
PANTHER:PTHR44149:SF3	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI000294B590	UniProt:M0UC12	MapMan:35.1	:	:

Description

Putative Pentatricopeptide repeat-containing protein At2g01740 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG24540_001]

Coordinates

chrchrUn_random:-:122642034..122645602

Molecular Weight (calculated)

50719.5 Da

IEP (calculated)

8.465

GRAVY (calculated)

0.118

Length

457 amino acids

Sequence
(BLAST)

001: MPREALEFFA KLQKLSRFPS HYACNRHLHR LTTGSLGDLA LKLLCALVSR GFRPDISALN SAVSLLARNG GPRSAQAFVD AAFPVLGCTP DVVTFNSLVD
101: GYCRADDLLG ASVILRSMQS CGPRPDVVTY NTMMSSLGKH RMPRSVLSYF ALMSKAHAPT VLTYTILVTM FRELGDLRMG YFALNDMQFL GISPNLVTFT
201: CLIDGCCKNN RLDMALELYD RMTSLSVPPN VFTFNALVDA LCKKGMLERA TEMFEKMHKI GVLANVVVYT SLIDGYLKKG DFDTAVRYLN RMYDRGICLN
301: VKGYGVVIWG LCNNGQLYRA LEMRKEMEGR GLIPDKFILT NLMDAHFKAG DVKKSLDLHK EMLINGFEPD QGNINDADKD FMDMPKAGLA LDKIDARLVG
401: VSSRPLLASQ LVTRCGLLTS YLSELPRSLE WCFPLDPKLI QVIGMVLALT QITALSP

Best Arabidopsis Sequence Match ( AT2G01740.1 )
(BLAST)

001: MVREALQFLS RLRKSSNLPD PFTCNKHIHQ LINSNCGILS LKFLAYLVSR GYTPHRSSFN SVVSFVCKLG QVKFAEDIVH SMPRFGCEPD VISYNSLIDG
101: HCRNGDIRSA SLVLESLRAS HGFICKPDIV SFNSLFNGFS KMKMLDEVFV YMGVMLKCCS PNVVTYSTWI DTFCKSGELQ LALKSFHSMK RDALSPNVVT
201: FTCLIDGYCK AGDLEVAVSL YKEMRRVRMS LNVVTYTALI DGFCKKGEMQ RAEEMYSRMV EDRVEPNSLV YTTIIDGFFQ RGDSDNAMKF LAKMLNQGMR
301: LDITAYGVII SGLCGNGKLK EATEIVEDME KSDLVPDMVI FTTMMNAYFK SGRMKAAVNM YHKLIERGFE PDVVALSTMI DGIAKNGQLH EAIVYFCIEK
401: ANDVMYTVLI DALCKEGDFI EVERLFSKIS EAGLVPDKFM YTSWIAGLCK QGNLVDAFKL KTRMVQEGLL LDLLAYTTLI YGLASKGLMV EARQVFDEML
501: NSGISPDSAV FDLLIRAYEK EGNMAAASDL LLDMQRRGLV TAVSDADCSK QCGNEVNCS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g01740 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.