Factsheet for GSMUA_AchrUn_randomP00300_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g03510.t01	Wine grape	mitochondrion	59.3	55.99
PGSC0003DMT400024895	Potato	cytosol	41.91	52.62
KXG40115	Sorghum	cytosol	39.48	52.55
TraesCS4A01G023000.1	Wheat	plastid	53.22	52.13
TraesCS4B01G280500.1	Wheat	plastid	53.04	51.96
KRH14574	Soybean	plastid	54.26	48.75
TraesCS4D01G279000.1	Wheat	mitochondrion	54.26	48.07
Zm00001d027800_P001	Maize	mitochondrion	53.91	47.77
HORVU4Hr1G074200.9	Barley	mitochondrion	54.43	45.89
PGSC0003DMT400003372	Potato	mitochondrion	56.17	44.25
Os03t0165100-00	Rice	cytosol, mitochondrion	52.87	41.76
Bra005695.1-P	Field mustard	mitochondrion	52.52	40.76
CDY11211	Canola	mitochondrion	52.52	40.76
AT5G01110.2	Thale cress	cytosol, plastid	52.17	39.63
CDX80791	Canola	mitochondrion	41.39	39.6
GSMUA_Achr8P16100_001	Banana	cytosol	15.13	31.87
GSMUA_Achr1P06500_001	Banana	cytosol	27.13	30.59
GSMUA_Achr1P22450_001	Banana	mitochondrion	26.96	27.68
GSMUA_Achr1P12600_001	Banana	extracellular	16.17	26.65
GSMUA_Achr11P...	Banana	cytosol	22.61	26.48
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	26.09	24.79
GSMUA_Achr8P04810_001	Banana	mitochondrion	30.43	24.07
GSMUA_AchrUn_...	Banana	cytosol	18.96	23.85
GSMUA_Achr6P34120_001	Banana	cytosol	20.17	23.34
GSMUA_Achr8P03570_001	Banana	mitochondrion	27.13	23.11
GSMUA_Achr6P35510_001	Banana	cytosol	28.0	22.97
GSMUA_Achr3P01360_001	Banana	mitochondrion	19.83	21.97
GSMUA_Achr1P17710_001	Banana	cytosol	23.3	21.93
GSMUA_Achr3P04340_001	Banana	cytosol	24.52	21.43
GSMUA_Achr1P12220_001	Banana	mitochondrion	25.39	20.98
GSMUA_Achr5P09880_001	Banana	mitochondrion	23.3	20.06
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	21.57	17.51

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP00300_001	EnsemblPlants:GSMUA_AchrUn_randomT00300_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG00300_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149
PANTHER:PTHR44149:SF3	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0002959F4E	UniProt:M0U542	MapMan:35.1	:

Description

Putative Pentatricopeptide repeat-containing protein At5g01110 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG00300_001]

Coordinates

chrchrUn_random:+:815849..819934

Molecular Weight (calculated)

64617.7 Da

IEP (calculated)

6.304

GRAVY (calculated)

-0.037

Length

575 amino acids

Sequence
(BLAST)

001: MIHYFVRNRR IAEAQALVLR LVRRRSASRA EVVAALATSY DRCEGPGSAV FDLLIRTYVQ ARKPREAAEA FRLLKARGLF VSVNACNLLL AGLVRMDWVD
101: MARDIYGEIV EMGVHPNIYT LNIMVNAFCK DRRFDQVNSF LLEMAKRGIF PDVVTHNTLI DAHCRAGHLE ESLQLLKSMG DNGLKPDVVT YNAVLNGFCK
201: NGLYDKAKEL LGEMLDAGLV PNASTFNIFL SGFCKIGNTS EAMRIYDKMV GSGLVPDIVS FSSVIDLFSK KGDMYRALAY FGDMKTIGLV PDNVIYTMLI
301: SGFCRIGLIT EALKMRDEMV DHGCLPDIVT YNTILNGICK EQRLSDADKL FHEMVERGIS PDFCTFTTLI DGYCKGGLVE KALRLFDKML ESNLKPDIVT
401: YNSLIDGCCK EGNMERVNEF LDEMVENRIA PNVVTYNSII KGYCRSGDAK KAEKFLEKMI DDSVIPDIIT YNTLIYGFVK EEKMHKALHL INKMENKGVP
501: PDVISYNVIL SAFCEQGEMQ EADSVFKRMV SRGVQPDGST YTTLINGHVA VDNLKEAFRL HDEMLQRGFV PDDKF

Best Arabidopsis Sequence Match ( AT5G01110.2 )
(BLAST)

001: MNQTTVKVFK FQFLFSIEIK LSLSQPQKMI VHRIIPSRVK DPLTRFKPLK NLTTSSSPVF EPSSSSSSSS SSASFSVSDS FLVEKICFSL KQGNNNVRNH
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G01110]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.