Factsheet for GSMUA_Achr8P04810_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99196	Soybean	cytosol	39.61	54.55
OQU90004	Sorghum	cytosol	35.49	54.32
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	54.88	53.34
CDY10136	Canola	cytosol	26.0	51.64
KRH45820	Soybean	cytosol, mitochondrion, plastid	52.41	51.35
Bra015447.1-P	Field mustard	cytosol	30.12	50.23
PGSC0003DMT400058276	Potato	mitochondrion	50.62	48.94
TraesCS2D01G229300.1	Wheat	mitochondrion	49.11	47.86
TraesCS2B01G273600.1	Wheat	plastid	49.11	47.86
Os07t0513200-01	Rice	mitochondrion	49.24	47.48
TraesCS2A01G223300.1	Wheat	mitochondrion, plastid	49.38	46.68
Zm00001d006478_P001	Maize	mitochondrion	47.46	46.31
HORVU2Hr1G046710.2	Barley	cytosol, plastid	48.28	45.35
CDY47261	Canola	plastid	45.39	45.27
AT1G05670.3	Thale cress	mitochondrion	46.08	45.21
GSMUA_Achr8P16100_001	Banana	cytosol	13.34	35.53
GSMUA_Achr1P12600_001	Banana	extracellular	15.82	32.95
GSMUA_Achr1P06500_001	Banana	cytosol	21.87	31.18
GSMUA_AchrUn_...	Banana	mitochondrion	24.07	30.43
GSMUA_Achr3P01360_001	Banana	mitochondrion	20.22	28.32
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	23.11	27.77
GSMUA_Achr11P...	Banana	cytosol	18.43	27.29
GSMUA_AchrUn_...	Banana	cytosol	17.06	27.13
GSMUA_Achr8P03570_001	Banana	mitochondrion	24.21	26.07
GSMUA_Achr1P22450_001	Banana	mitochondrion	19.67	25.54
GSMUA_Achr6P34120_001	Banana	cytosol	16.92	24.75
GSMUA_Achr1P17710_001	Banana	cytosol	20.5	24.39
GSMUA_Achr6P35510_001	Banana	cytosol	23.38	24.25
GSMUA_Achr3P04340_001	Banana	cytosol	21.6	23.86
GSMUA_Achr1P12220_001	Banana	mitochondrion	22.7	23.71
GSMUA_Achr5P09880_001	Banana	mitochondrion	20.77	22.6
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	20.5	21.05

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	EnsemblPlantsGene:GSMUA_Achr8G04810_001
EnsemblPlants:GSMUA_Achr8P04810_001	EnsemblPlants:GSMUA_Achr8T04810_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0TMN4	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF949	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296820E	SEG:seg	:	:

Description

Putative Pentatricopeptide repeat-containing protein At1g05665, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr8G04810_001]

Coordinates

chr8:-:3181543..3183726

Molecular Weight (calculated)

82094.5 Da

IEP (calculated)

7.096

GRAVY (calculated)

-0.104

Length

727 amino acids

Sequence
(BLAST)

001: MFRHAAATRP KSYFFLAHRR QLSSQRHAFP VDFIATAIRP FPDYSPKKPA IYDAELVRSI VTALKQRRSE SPDVILGPFA ARFRSDHLVW AFLHLRSDPV
101: LVGALLHWYR PRGRPVPAEA LAIAAHVAVV SGEPASARRL LRDGLVSHRN FVDRVIYTYK YWCSVPSVFD LLFGAIVDIN RLDEARTLFR HLVTYGIIVS
201: ADACNALLSR LTLDHMLSTF SEFQELGLRW NTKSCNVLIH GFCGAGKTGE AHRILLEMEG TVGASPDIIS YSTLIDAYCR YGELLQATEL FEEMGDKGLM
301: PNAFTFNSLI TLLCKNEKVV EAERVFTEMM FRGVAPDHVV YTTLINGYCK SGKLPAVYRL VEEMKNSQLV PDTVTYTALI YGLSRSGNMV EANKLFREMV
401: GKGLSPDEVT YTALIDGYCK EGKMNDAFYL HNEMLQMGLV PNVVTYTALS DGLCKQGEVE TANELLRETS GKGLELNVFT YNSLINGLCK IGNIEQAVKT
501: MVDMEAAGLC PDVYTYTTIM DAYSKSGEMD QAHDLLREML DKGIQPSIVT FNVLMNGFCT AGMLEDGRRL LEWMLERSIM PNSATYNSLL RHYCMEKTMK
601: TTTKIYKEMR ASGIMPDENT YNILIRGHCR ARNMKEACYF HSEMIGKGFS LSRGSYNALI KGLVRKKRLT EATQLFEEMR AKNLVANREI YNIFIDINYT
701: EQNIEMTLEL CDEAVEKCLP ESDLNKI

Best Arabidopsis Sequence Match ( AT1G05670.3 )
(BLAST)

001: MKKPFTGLLM KRGTLSSFRN FIQLFSLQSR GLSFSTLTDT RPFPDYSPKK ASVRDTEFVH QITNVIKLRR AEPLRRSLKP YECKFKTDHL IWVLMKIKCD
101: YRLVLDFFDW ARSRRDSNLE SLCIVIHLAV ASKDLKVAQS LISSFWERPK LNVTDSFVQF FDLLVYTYKD WGSDPRVFDV FFQVLVDFGL LREARRVFEK
201: MLNYGLVLSV DSCNVYLTRL SKDCYKTATA IIVFREFPEV GVCWNVASYN IVIHFVCQLG RIKEAHHLLL LMELKGYTPD VISYSTVVNG YCRFGELDKV
301: WKLIEVMKRK GLKPNSYIYG SIIGLLCRIC KLAEAEEAFS EMIRQGILPD TVVYTTLIDG FCKRGDIRAA SKFFYEMHSR DITPDVLTYT AIISGFCQIG
401: DMVEAGKLFH EMFCKGLEPD SVTFTELING YCKAGHMKDA FRVHNHMIQA GCSPNVVTYT TLIDGLCKEG DLDSANELLH EMWKIGLQPN IFTYNSIVNG
501: LCKSGNIEEA VKLVGEFEAA GLNADTVTYT TLMDAYCKSG EMDKAQEILK EMLGKGLQPT IVTFNVLMNG FCLHGMLEDG EKLLNWMLAK GIAPNATTFN
601: SLVKQYCIRN NLKAATAIYK DMCSRGVGPD GKTYENLVKG HCKARNMKEA WFLFQEMKGK GFSVSVSTYS VLIKGFLKRK KFLEAREVFD QMRREGLAAD
701: KEIFDFFSDT KYKGKRPDTI VDPIDEIIEN YLVDEQLRGA N

Arabidopsis Description

Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A068FPW3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.