Factsheet for GSMUA_Achr8P16100_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU81794	Sorghum	mitochondrion, peroxisome	61.17	41.44
Os04t0477200-01	Rice	endoplasmic reticulum	60.07	36.04
HORVU2Hr1G082620.1	Barley	plastid	61.9	33.4
TraesCS2B01G355200.1	Wheat	plastid	62.27	32.44
TraesCS2A01G326700.1	Wheat	plastid	62.27	32.44
TraesCS2D01G336100.1	Wheat	plastid	61.9	32.25
Zm00001d003294_P001	Maize	plastid	59.34	30.92
VIT_12s0055g00970.t01	Wine grape	plastid	62.64	26.97
KRH24548	Soybean	mitochondrion	61.17	26.81
Solyc01g109060.2.1	Tomato	mitochondrion	57.51	25.4
PGSC0003DMT400066731	Potato	mitochondrion, plastid	56.41	24.92
Bra015229.1-P	Field mustard	mitochondrion	55.68	24.01
CDY36644	Canola	mitochondrion	55.68	24.01
CDX71231	Canola	mitochondrion	54.58	23.61
KRH29553	Soybean	mitochondrion	37.36	23.29
AT2G15630.1	Thale cress	mitochondrion	53.48	23.29
GSMUA_Achr1P12600_001	Banana	extracellular	25.27	19.77
GSMUA_Achr11P...	Banana	cytosol	34.07	18.94
GSMUA_Achr1P06500_001	Banana	cytosol	30.4	16.27
GSMUA_AchrUn_...	Banana	cytosol	26.74	15.97
GSMUA_Achr6P34120_001	Banana	cytosol	28.94	15.9
GSMUA_AchrUn_...	Banana	mitochondrion	31.87	15.13
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	31.87	14.38
GSMUA_Achr6P35510_001	Banana	cytosol	35.16	13.69
GSMUA_Achr3P01360_001	Banana	mitochondrion	26.01	13.68
GSMUA_Achr8P04810_001	Banana	mitochondrion	35.53	13.34
GSMUA_Achr1P22450_001	Banana	mitochondrion	26.74	13.04
GSMUA_Achr8P03570_001	Banana	mitochondrion	31.14	12.59
GSMUA_Achr1P12220_001	Banana	mitochondrion	31.14	12.21
GSMUA_Achr1P17710_001	Banana	cytosol	25.27	11.29
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	26.74	10.31
GSMUA_Achr5P09880_001	Banana	mitochondrion	24.18	9.88
GSMUA_Achr3P04340_001	Banana	cytosol	20.88	8.66

Protein Annotations

EnsemblPlants:GSMUA_Achr8P16100_001	EnsemblPlants:GSMUA_Achr8T16100_001	EnsemblPlantsGene:GSMUA_Achr8G16100_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI000296B865	UniProt:M0TQW3
MapMan:35.1	:	:	:	:	:

Description

Putative Pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr8G16100_001]

Coordinates

chr8:-:13906285..13907232

Molecular Weight (calculated)

30593.4 Da

IEP (calculated)

5.494

GRAVY (calculated)

-0.267

Length

273 amino acids

Sequence
(BLAST)

001: MMFVEMQDRG LVPTAVTYNA LIDGCCNKGN LDDAFRYRDE MVEKGIEPTV CTYNLLVHAL FMEGRNEEAH TLIKEMEQKG MVPDAITFNI LINGYCKEGN
101: ADKAFKMFEE MKGKGIRPTR VTYTSLIYGF CKRNRLAEAD GLFKEAMHKG LLPDLVMYNA LIDGHCGGGK MERAFELLKE LERKKIAPDE VTFNSLMRGL
201: CLLGKVEEAR GLIDEMTRRG IIPDLVSLCK NGEGDHAEQL LKEMVSKGIT PVDSTYMALI EGLGDGKKTI KNE

Best Arabidopsis Sequence Match ( AT2G15630.1 )
(BLAST)

001: MRRFTVPCIL RHRISILSGA GYSPAAARLS SLAQTSTPES VLPPITSEIL LESIRSSQWH IVEHVADKLT PSLVSTTLLS LVKTPNLAFN FVNHIDLYRL
101: DFQTQCLAIA VISKLSSPKP VTQLLKEVVT SRKNSIRNLF DELVLAHDRL ETKSTILFDL LVRCCCQLRM VDEAIECFYL MKEKGFYPKT ETCNHILTLL
201: SRLNRIENAW VFYADMYRME IKSNVYTFNI MINVLCKEGK LKKAKGFLGI MEVFGIKPTI VTYNTLVQGF SLRGRIEGAR LIISEMKSKG FQPDMQTYNP
301: ILSWMCNEGR ASEVLREMKE IGLVPDSVSY NILIRGCSNN GDLEMAFAYR DEMVKQGMVP TFYTYNTLIH GLFMENKIEA AEILIREIRE KGIVLDSVTY
401: NILINGYCQH GDAKKAFALH DEMMTDGIQP TQFTYTSLIY VLCRKNKTRE ADELFEKVVG KGMKPDLVMM NTLMDGHCAI GNMDRAFSLL KEMDMMSINP
501: DDVTYNCLMR GLCGEGKFEE ARELMGEMKR RGIKPDHISY NTLISGYSKK GDTKHAFMVR DEMLSLGFNP TLLTYNALLK GLSKNQEGEL AEELLREMKS
601: EGIVPNDSSF CSVIEAMSNL DAKKSDS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.