Factsheet for VIT_12s0055g00970.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24548	Soybean	mitochondrion	64.35	65.49
Solyc01g109060.2.1	Tomato	mitochondrion	62.46	64.08
PGSC0003DMT400066731	Potato	mitochondrion, plastid	61.99	63.59
GSMUA_Achr8P16100_001	Banana	cytosol	26.97	62.64
KRH29553	Soybean	mitochondrion	42.43	61.42
AT2G15630.1	Thale cress	mitochondrion	55.05	55.66
CDY36644	Canola	mitochondrion	53.79	53.87
OQU81794	Sorghum	mitochondrion, peroxisome	34.23	53.85
Bra015229.1-P	Field mustard	mitochondrion	53.47	53.55
CDX71231	Canola	mitochondrion	53.0	53.25
Os04t0477200-01	Rice	endoplasmic reticulum	35.33	49.23
HORVU2Hr1G082620.1	Barley	plastid	37.38	46.84
Zm00001d003294_P001	Maize	plastid	38.64	46.76
TraesCS2D01G336100.1	Wheat	plastid	38.64	46.76
TraesCS2A01G326700.1	Wheat	plastid	38.33	46.37
TraesCS2B01G355200.1	Wheat	plastid	38.17	46.18
VIT_06s0009g03510.t01	Wine grape	mitochondrion	27.92	29.06
VIT_14s0006g00170.t01	Wine grape	mitochondrion	27.13	29.05
VIT_06s0004g04770.t01	Wine grape	plastid	25.71	28.95
VIT_14s0060g01220.t01	Wine grape	mitochondrion	27.13	28.24
VIT_08s0040g01530.t01	Wine grape	cytosol	26.5	27.1
VIT_14s0083g00550.t01	Wine grape	cytosol	24.92	26.78
VIT_12s0057g00740.t01	Wine grape	mitochondrion	21.92	26.23
VIT_13s0019g03690.t01	Wine grape	cytosol	19.72	25.61
VIT_01s0010g01780.t01	Wine grape	cytosol	22.4	25.54
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	29.81	24.8
VIT_17s0000g03060.t01	Wine grape	plastid	24.92	23.94
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	27.76	23.53
VIT_01s0011g04390.t01	Wine grape	plastid	25.87	22.84
VIT_01s0011g01910.t01	Wine grape	mitochondrion	23.34	20.9
VIT_17s0000g06480.t01	Wine grape	cytosol	8.83	20.59

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100250452	wikigene:100250452	MapMan:35.1	ProteinID:CBI20053	ProteinID:CBI20053.3
UniProt:D7STD9	EMBL:FN595228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100250452
wikigene:LOC100250452	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF918	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001BE19D2
ArrayExpress:VIT_12s0055g00970	EnsemblPlantsGene:VIT_12s0055g00970	EnsemblPlants:VIT_12s0055g00970.t01	RefSeq:XP_002269015	RefSeq:XP_002269015.1	:

Description

No Description!

Coordinates

chr12:+:14435653..14437557

Molecular Weight (calculated)

71505.0 Da

IEP (calculated)

7.428

GRAVY (calculated)

-0.175

Length

634 amino acids

Sequence
(BLAST)

001: MGASLRPRFL GSAANTPNAG DTNSSTFHFS FNRNFNSLAS SESTPPITEE VISKSVLSSQ WHFIEQVSPN LTPALISNVL YNLCSKPQLV SDFIHHLHPH
101: CLDTKSYCLA VVLLARLPSP KLALQLLKQV MGTRIATNRE LFDELTLSRD RLSVKSSIVF DLLVRVCCEL RRADEAFKCF YMMKEKGIVP KIETCNDMLS
201: LFLKLNRMEM AWVLYAEMFR LRISSTVYTF NIMVNVLCKE GKLKKAREFI GFMEGLGFKP NVVSYNTIIH GYSSRGNIEG ARRILDAMRV KGIEPDSYTY
301: GSLISGMCKE GRLEEASGLF DKMVEIGLVP NAVTYNTLID GYCNKGDLER AFSYRDEMVK KGIMPSVSTY NLLVHALFME GRMGEADDMI KEMRKKGIIP
401: DAITYNILIN GYSRCGNAKK AFDLHNEMLS KGIEPTHVTY TSLIYVLSRR NRMKEADDLF EKILDQGVSP DVIMFNAMVD GHCANGNVER AFMLLKEMDR
501: KSVPPDEVTF NTLMQGRCRE GKVEEARMLL DEMKRRGIKP DHISYNTLIS GYGRRGDIKD AFRVRDEMLS IGFNPTLLTY NALIKCLCKN QEGDLAEELL
601: KEMVNKGISP DDSTYLSLIE GMGNVDTLVE DNAS

Best Arabidopsis Sequence Match ( AT2G15630.1 )
(BLAST)

001: MRRFTVPCIL RHRISILSGA GYSPAAARLS SLAQTSTPES VLPPITSEIL LESIRSSQWH IVEHVADKLT PSLVSTTLLS LVKTPNLAFN FVNHIDLYRL
101: DFQTQCLAIA VISKLSSPKP VTQLLKEVVT SRKNSIRNLF DELVLAHDRL ETKSTILFDL LVRCCCQLRM VDEAIECFYL MKEKGFYPKT ETCNHILTLL
201: SRLNRIENAW VFYADMYRME IKSNVYTFNI MINVLCKEGK LKKAKGFLGI MEVFGIKPTI VTYNTLVQGF SLRGRIEGAR LIISEMKSKG FQPDMQTYNP
301: ILSWMCNEGR ASEVLREMKE IGLVPDSVSY NILIRGCSNN GDLEMAFAYR DEMVKQGMVP TFYTYNTLIH GLFMENKIEA AEILIREIRE KGIVLDSVTY
401: NILINGYCQH GDAKKAFALH DEMMTDGIQP TQFTYTSLIY VLCRKNKTRE ADELFEKVVG KGMKPDLVMM NTLMDGHCAI GNMDRAFSLL KEMDMMSINP
501: DDVTYNCLMR GLCGEGKFEE ARELMGEMKR RGIKPDHISY NTLISGYSKK GDTKHAFMVR DEMLSLGFNP TLLTYNALLK GLSKNQEGEL AEELLREMKS
601: EGIVPNDSSF CSVIEAMSNL DAKKSDS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.