Factsheet for VIT_03s0063g00930.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G39710.1	Thale cress	mitochondrion	64.44	65.73
CDX74435	Canola	mitochondrion	64.17	65.64
Bra025651.1-P	Field mustard	mitochondrion	64.04	65.5
CDY30265	Canola	mitochondrion	62.6	65.34
PGSC0003DMT400066369	Potato	mitochondrion	63.65	63.23
Solyc01g108410.1.1	Tomato	mitochondrion	63.65	63.23
KRG89236	Soybean	plastid	63.52	62.21
KRH49758	Soybean	plastid	48.16	52.13
OQU75844	Sorghum	cytosol	37.4	51.72
GSMUA_Achr3P04340_001	Banana	cytosol	43.44	50.3
Os06t0152500-00	Rice	plastid	43.83	48.13
TraesCS7A01G109000.1	Wheat	plastid	42.78	46.91
TraesCS7B01G006900.1	Wheat	plastid	42.26	46.33
TraesCS7D01G103900.1	Wheat	plastid	42.26	46.33
Zm00001d010121_P001	Maize	plastid	41.86	46.16
Zm00001d045319_P001	Maize	plastid	41.6	45.88
HORVU7Hr1G023200.23	Barley	cytosol	41.08	45.1
VIT_06s0009g03510.t01	Wine grape	mitochondrion	26.25	32.84
VIT_14s0060g01220.t01	Wine grape	mitochondrion	25.59	32.02
VIT_06s0004g04770.t01	Wine grape	plastid	22.57	30.55
VIT_01s0010g01780.t01	Wine grape	cytosol	22.18	30.4
VIT_12s0055g00970.t01	Wine grape	plastid	24.8	29.81
VIT_13s0019g03690.t01	Wine grape	cytosol	18.9	29.51
VIT_14s0006g00170.t01	Wine grape	mitochondrion	22.44	28.89
VIT_12s0057g00740.t01	Wine grape	mitochondrion	19.68	28.3
VIT_01s0011g04390.t01	Wine grape	plastid	26.64	28.27
VIT_08s0040g01530.t01	Wine grape	cytosol	22.97	28.23
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	26.9	27.41
VIT_17s0000g06480.t01	Wine grape	cytosol	9.58	26.84
VIT_01s0011g01910.t01	Wine grape	mitochondrion	24.8	26.69
VIT_14s0083g00550.t01	Wine grape	cytosol	19.42	25.08
VIT_17s0000g03060.t01	Wine grape	plastid	20.6	23.79

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100855388	wikigene:100855388	MapMan:35.1	ProteinID:CCB56902	ProteinID:CCB56902.1
UniProt:F6HQE5	EMBL:FN596006	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
EntrezGene:LOC100855388	wikigene:LOC100855388	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF280	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015C8AD9
ArrayExpress:VIT_03s0063g00930	EnsemblPlantsGene:VIT_03s0063g00930	EnsemblPlants:VIT_03s0063g00930.t01	RefSeq:XP_003631674	RefSeq:XP_003631674.1	:

Description

No Description!

Coordinates

chr3:-:4365445..4367733

Molecular Weight (calculated)

85425.3 Da

IEP (calculated)

6.935

GRAVY (calculated)

-0.117

Length

762 amino acids

Sequence
(BLAST)

001: MLLPKSYHRP NLPELVSSKA RFSSLSSTSH ALLVDKAITL LKFHPHHLDS LSSRFTPQSA SYFLLKSQFD QTLTLKFLTW ARNHPFFDSH CKCLSLHILT
101: RFKLYKTAQT LAQELALSAS DPSGSSIFQC LKDSYHVYNS SSAVFDLMVK SYSHLNMIDQ AVNTINLAKS SGFMPGVLSY NSVLDAIVRS RGSVKLSAEE
201: VYREMIRSRV SPNVYTYNIL IRGFCSVGEL QKGLGCFGEM ERNGCLPNVV TYNTLIDAYC KMGRIDEAFG LLKSMSSKGM QPNLISYNVI INGLCREGSM
301: KEAWEILEEM GYKGFTPDEV TYNTLLNGYC KEGNFHQALV IHAEMVRNGV SPSVVTYTAL INSMCKARNL NRAMEFFDQM RIRGLRPNER TYTTLIDGFS
401: RQGLLNEAYR ILNEMTESGF SPSVVTYNAF IHGHCVLERM EEALGVVQEM VEKGLAPDVV SYSTIISGFC RKGELDRAFQ MKQEMVEKGV SPDAVTYSSL
501: IQGLCEMRRL TEACDLSQEM LDMGLPPDEF TYTTLINAYC VEGDLNKALH LHDEMIHKGF LPDAVTYSVL INGLNKQART REAKRLLFKL IYEESVPSDV
601: TYDTLIENCS NIEFKSVVAL IKGFCMKGLM HEADRVFESM VERNHKPGEA VYNVIIHGHC RGGNLPKAFN LYKEMIHSGF VPHTVTVITL IKALFKEGMN
701: EEMSEVIGDT LRSCRLNEAE LAKVLVEINH KEGNMEAVLN VLTDMAKDGL LPNSGKTAYA GG

Best Arabidopsis Sequence Match ( AT5G39710.1 )
(BLAST)

001: MFLTKTLIRR SLSTFASSPS DSLLADKALT FLKRHPYQLH HLSANFTPEA ASNLLLKSQN DQALILKFLN WANPHQFFTL RCKCITLHIL TKFKLYKTAQ
101: ILAEDVAAKT LDDEYASLVF KSLQETYDLC YSTSSVFDLV VKSYSRLSLI DKALSIVHLA QAHGFMPGVL SYNAVLDATI RSKRNISFAE NVFKEMLESQ
201: VSPNVFTYNI LIRGFCFAGN IDVALTLFDK METKGCLPNV VTYNTLIDGY CKLRKIDDGF KLLRSMALKG LEPNLISYNV VINGLCREGR MKEVSFVLTE
301: MNRRGYSLDE VTYNTLIKGY CKEGNFHQAL VMHAEMLRHG LTPSVITYTS LIHSMCKAGN MNRAMEFLDQ MRVRGLCPNE RTYTTLVDGF SQKGYMNEAY
401: RVLREMNDNG FSPSVVTYNA LINGHCVTGK MEDAIAVLED MKEKGLSPDV VSYSTVLSGF CRSYDVDEAL RVKREMVEKG IKPDTITYSS LIQGFCEQRR
501: TKEACDLYEE MLRVGLPPDE FTYTALINAY CMEGDLEKAL QLHNEMVEKG VLPDVVTYSV LINGLNKQSR TREAKRLLLK LFYEESVPSD VTYHTLIENC
601: SNIEFKSVVS LIKGFCMKGM MTEADQVFES MLGKNHKPDG TAYNIMIHGH CRAGDIRKAY TLYKEMVKSG FLLHTVTVIA LVKALHKEGK VNELNSVIVH
701: VLRSCELSEA EQAKVLVEIN HREGNMDVVL DVLAEMAKDG FLPNGIS

Arabidopsis Description

EMB2745Pentatricopeptide repeat-containing protein At5g39710 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.