Factsheet for VIT_17s0000g06480.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54581	Soybean	mitochondrion	55.51	28.38
CDX87212	Canola	plastid	47.79	20.28
Bra035931.1-P	Field mustard	mitochondrion	47.79	20.09
HORVU0Hr1G013090.3	Barley	cytosol, plastid	42.65	20.03
AT5G61400.1	Thale cress	mitochondrion	48.16	20.03
HORVU5Hr1G066340.2	Barley	mitochondrion	42.65	18.71
TraesCS5A01G229600.1	Wheat	mitochondrion	42.65	18.71
Solyc06g069700.2.1	Tomato	plastid	55.15	18.61
TraesCS5B01G228400.1	Wheat	plastid	43.38	18.15
Zm00001d020436_P001	Maize	mitochondrion	41.54	17.8
TraesCS5D01G237900.1	Wheat	plastid	42.65	17.52
Os09t0417500-01	Rice	mitochondrion	39.34	17.31
EER96725	Sorghum	mitochondrion, plastid	40.07	17.11
VIT_13s0019g03690.t01	Wine grape	cytosol	30.15	16.8
VIT_01s0010g01780.t01	Wine grape	cytosol	29.41	14.39
VIT_06s0009g03510.t01	Wine grape	mitochondrion	27.57	12.32
VIT_08s0040g01530.t01	Wine grape	cytosol	27.21	11.94
VIT_01s0011g04390.t01	Wine grape	plastid	26.47	10.03
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	26.84	9.58
VIT_06s0004g04770.t01	Wine grape	plastid	19.12	9.24
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	25.0	9.09
VIT_12s0055g00970.t01	Wine grape	plastid	20.59	8.83
VIT_01s0011g01910.t01	Wine grape	mitochondrion	22.79	8.76
VIT_14s0060g01220.t01	Wine grape	mitochondrion	18.75	8.37
VIT_14s0083g00550.t01	Wine grape	cytosol	16.54	7.63
VIT_14s0006g00170.t01	Wine grape	mitochondrion	15.07	6.93
VIT_17s0000g03060.t01	Wine grape	plastid	11.03	4.55
VIT_12s0057g00740.t01	Wine grape	mitochondrion	6.62	3.4

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100853899	wikigene:100853899	MapMan:35.1	ProteinID:CCB43072	ProteinID:CCB43072.1
UniProt:F6GT63	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100853899
wikigene:LOC100853899	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF793	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00021099EE	ArrayExpress:VIT_17s0000g06480	EnsemblPlantsGene:VIT_17s0000g06480
EnsemblPlants:VIT_17s0000g06480.t01	RefSeq:XP_003634263	RefSeq:XP_003634263.1	:	:	:

Description

No Description!

Coordinates

chr17:-:7053238..7054402

Molecular Weight (calculated)

29931.6 Da

IEP (calculated)

7.335

GRAVY (calculated)

-0.015

Length

272 amino acids

Sequence
(BLAST)

001: MKKKGFLPNA VTYNTLIDGY CKEGNMEKAI EVCSQMTEKG IEPNIITFST LIDGYCKAGK MEAAMGLYTE MVIKGLLPDV VAYTALIDGH FKDGNTKEAF
101: RLHKEMQEAG LHPNVFTLSC LIDGLCKDGR ISDAIKLFLA KTGTDTTGSK TNELDRSLCS PNHVMYTALI QGLCTDGRIF KASKFFSDMR CSGLRPDVFT
201: CIVIIQGHFR AMHLRDVMML QADILKMGII PNSSVYRVLA KGYEESGYLK SALRCSEDLS GIGIGCSNLN DL

Best Arabidopsis Sequence Match ( AT5G61400.1 )
(BLAST)

001: MLKLLLPQHR TSVYLFKFQF FNFRFLSQSP SLSNSASSFS SSSLAEAILK CRSAEEAFKL FETSSRSRVS KSNDLQSFSA VIHVLTGAHK YTLARCLIKS
101: LIERLKRHSE PSNMSHRLFN ALEDIQSPKF SIGVFSLLIM EFLEMGLFEE ALWVSREMKC SPDSKACLSI LNGLVRRRRF DSVWVDYQLM ISRGLVPDVH
201: IYFVLFQCCF KQGLYSKKEK LLDEMTSLGI KPNVYIYTIY ILDLCRDNKM EEAEKMFELM KKHGVLPNLY TYSAMIDGYC KTGNVRQAYG LYKEILVAEL
301: LPNVVVFGTL VDGFCKAREL VTARSLFVHM VKFGVDPNLY VYNCLIHGHC KSGNMLEAVG LLSEMESLNL SPDVFTYTIL INGLCIEDQV AEANRLFQKM
401: KNERIFPSSA TYNSLIHGYC KEYNMEQALD LCSEMTASGV EPNIITFSTL IDGYCNVRDI KAAMGLYFEM TIKGIVPDVV TYTALIDAHF KEANMKEALR
501: LYSDMLEAGI HPNDHTFACL VDGFWKEGRL SVAIDFYQEN NQQRSCWNHV GFTCLIEGLC QNGYILRASR FFSDMRSCGI TPDICSYVSM LKGHLQEKRI
601: TDTMMLQCDM IKTGILPNLL VNQLLARFYQ ANGYVKSACF LTNSSRLKTV SNSC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61400 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.