Factsheet for HORVU0Hr1G013090.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid, secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G066340.2	Barley	mitochondrion	93.96	87.74
TraesCS5A01G229600.1	Wheat	mitochondrion	88.77	82.9
TraesCS5B01G228400.1	Wheat	plastid	89.98	80.15
TraesCS5D01G237900.1	Wheat	plastid	89.46	78.25
Os09t0417500-01	Rice	mitochondrion	70.98	66.5
Zm00001d020436_P001	Maize	mitochondrion	69.08	62.99
EER96725	Sorghum	mitochondrion, plastid	68.74	62.48
VIT_17s0000g06480.t01	Wine grape	cytosol	20.03	42.65
KRH54581	Soybean	mitochondrion	29.53	32.14
CDX87212	Canola	plastid	32.64	29.49
HORVU2Hr1G019920.1	Barley	cytosol	18.83	29.14
AT5G61400.1	Thale cress	mitochondrion	32.3	28.59
Bra035931.1-P	Field mustard	mitochondrion	31.78	28.44
Solyc06g069700.2.1	Tomato	plastid	39.38	28.29
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	9.33	24.66
HORVU2Hr1G082620.1	Barley	plastid	21.42	24.51
HORVU3Hr1G086290.19	Barley	plastid	16.75	23.83
HORVU2Hr1G019880.2	Barley	cytosol	14.68	23.61
HORVU1Hr1G093590.2	Barley	cytosol	9.5	23.11
HORVU7Hr1G087760.14	Barley	cytosol, mitochondrion	25.73	21.56
HORVU4Hr1G074200.9	Barley	mitochondrion	24.87	21.11
HORVU1Hr1G042440.2	Barley	mitochondrion	20.55	20.77
HORVU5Hr1G042300.1	Barley	plastid	25.22	20.48
HORVU7Hr1G023200.23	Barley	cytosol	22.45	18.73
HORVU2Hr1G046710.2	Barley	cytosol, plastid	24.35	18.22
HORVU5Hr1G009510.3	Barley	cytosol	17.96	17.63
HORVU7Hr1G028150.1	Barley	mitochondrion	14.85	17.03
HORVU6Hr1G087430.7	Barley	cytosol	17.96	16.86
HORVU4Hr1G070310.1	Barley	plastid	24.18	16.75
HORVU2Hr1G080860.1	Barley	plastid	17.79	16.3
HORVU2Hr1G080360.2	Barley	mitochondrion	13.64	15.43

Protein Annotations

EnsemblPlants:HORVU0Hr1G013090.3	EnsemblPlantsGene:HORVU0Hr1G013090	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF793	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI000B46BBC0	UniProt:A0A287E0Q1	MapMan:35.1	:

Description

No Description!

Coordinates

chrchrUn:+:75457257..75459176

Molecular Weight (calculated)

59715.5 Da

IEP (calculated)

6.388

GRAVY (calculated)

0.082

Length

579 amino acids

Sequence
(BLAST)

001: MXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXARPGA AAFAALASTS TSPGPALGVL VIALSQMALH DEALSVFHRL RTLPALPACN AILDVLVKAH
101: RFDRVWKLFD EMLSRGMVPT VVTYNTLINA CRHEGAVAKA REVWGQMVAR RIGPNVVTYS TMISALCDEG CIGEAEQLFF TMKETGMQPN HYTYNALMSS
201: HCKRDGIKRA LTLYQELLKS GLVPNAVIFT TLIDGFFQVN RISDAKNIFL DMHRYGVAPT VPVYNSLIDG AFRSSDSQEA LTVYEDMTRL GLCPDEFTCS
301: IIVRGLCSGG QVQVAARFLE AMQQSGINLN AAAFNALIDE YCKNGNLAEA LATCTIMSEI GIDANVVTYS SLIDGHSKKG KMEIAMAIYT EMIAKGVEPN
401: VLTYTALIHG HAKDGDINAA FRLQKEMAEK GISPNSVTVS VLVDGLCREN RIQDAVMIFM KHSGQKKPAD IHTCLSNSTT EEDHSIPNSV TYMTLIYGLY
501: IDGQYHEAGK FFSCMRESGM VPDSFTYSLL IRGQCMLGYV LNAMMLYADM LKVGVKPMTT VCPDIWSRDA PNDLKTVET

Best Arabidopsis Sequence Match ( AT5G61400.1 )
(BLAST)

001: MLKLLLPQHR TSVYLFKFQF FNFRFLSQSP SLSNSASSFS SSSLAEAILK CRSAEEAFKL FETSSRSRVS KSNDLQSFSA VIHVLTGAHK YTLARCLIKS
101: LIERLKRHSE PSNMSHRLFN ALEDIQSPKF SIGVFSLLIM EFLEMGLFEE ALWVSREMKC SPDSKACLSI LNGLVRRRRF DSVWVDYQLM ISRGLVPDVH
201: IYFVLFQCCF KQGLYSKKEK LLDEMTSLGI KPNVYIYTIY ILDLCRDNKM EEAEKMFELM KKHGVLPNLY TYSAMIDGYC KTGNVRQAYG LYKEILVAEL
301: LPNVVVFGTL VDGFCKAREL VTARSLFVHM VKFGVDPNLY VYNCLIHGHC KSGNMLEAVG LLSEMESLNL SPDVFTYTIL INGLCIEDQV AEANRLFQKM
401: KNERIFPSSA TYNSLIHGYC KEYNMEQALD LCSEMTASGV EPNIITFSTL IDGYCNVRDI KAAMGLYFEM TIKGIVPDVV TYTALIDAHF KEANMKEALR
501: LYSDMLEAGI HPNDHTFACL VDGFWKEGRL SVAIDFYQEN NQQRSCWNHV GFTCLIEGLC QNGYILRASR FFSDMRSCGI TPDICSYVSM LKGHLQEKRI
601: TDTMMLQCDM IKTGILPNLL VNQLLARFYQ ANGYVKSACF LTNSSRLKTV SNSC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61400 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.