Factsheet for HORVU6Hr1G084410.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G093590.2	Barley	cytosol	92.24	84.87
HORVU2Hr1G080360.2	Barley	mitochondrion	84.47	36.13
TraesCS2D01G324100.1	Wheat	plastid	80.37	35.06
TraesCS2B01G343000.1	Wheat	cytosol, plastid	78.54	34.26
TraesCS2A01G339000.1	Wheat	cytosol	79.91	31.88
GSMUA_Achr1P12600_001	Banana	extracellular	47.49	29.8
Os10t0363500-00	Rice	endoplasmic reticulum	65.3	27.93
Zm00001d030479_P001	Maize	plastid	59.82	25.99
CDX94295	Canola	cytosol	19.63	24.29
KRH44246	Soybean	cytosol	45.21	19.84
VIT_12s0057g00740.t01	Wine grape	mitochondrion	44.29	18.3
PGSC0003DMT400015722	Potato	cytosol	43.38	17.92
AT4G26680.1	Thale cress	mitochondrion	41.55	17.47
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	42.01	17.36
HORVU3Hr1G086290.19	Barley	plastid	31.51	16.95
CDX94298	Canola	mitochondrion	41.1	15.82
HORVU2Hr1G019920.1	Barley	cytosol	21.92	12.83
HORVU2Hr1G082620.1	Barley	plastid	29.22	12.65
HORVU7Hr1G028150.1	Barley	mitochondrion	28.31	12.28
HORVU2Hr1G080860.1	Barley	plastid	32.88	11.39
HORVU6Hr1G087430.7	Barley	cytosol	30.14	10.7
HORVU7Hr1G023200.23	Barley	cytosol	32.88	10.37
HORVU5Hr1G009510.3	Barley	cytosol	26.94	10.0
HORVU1Hr1G042440.2	Barley	mitochondrion	26.03	9.95
HORVU0Hr1G013090.3	Barley	cytosol, plastid	24.66	9.33
HORVU5Hr1G042300.1	Barley	plastid	29.68	9.12
HORVU2Hr1G046710.2	Barley	cytosol, plastid	31.51	8.91
HORVU5Hr1G066340.2	Barley	mitochondrion	24.66	8.71
HORVU4Hr1G074200.9	Barley	mitochondrion	25.11	8.06
HORVU4Hr1G070310.1	Barley	plastid	29.68	7.78
HORVU7Hr1G087760.14	Barley	cytosol, mitochondrion	24.2	7.67
Bra026410.1-P	Field mustard	mitochondrion	41.55	6.9
CDX89313	Canola	mitochondrion	41.55	6.73
HORVU2Hr1G019880.2	Barley	cytosol	10.5	6.39

Protein Annotations

EnsemblPlants:HORVU6Hr1G084410.1	EnsemblPlantsGene:HORVU6Hr1G084410	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1580
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
UniParc:UPI000B462537	UniProt:A0A287UZR0	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:554708971..554725027

Molecular Weight (calculated)

24679.3 Da

IEP (calculated)

8.483

GRAVY (calculated)

-0.116

Length

219 amino acids

Sequence
(BLAST)

001: MSSCCSGLAS YRAYLRAFCA LGRVADAAMV LDEMPDWGVH RTVVSFNTLI AAYCKEHGGL EHALELKKRM ELEGLTPNSA TFSILHHGLC KEGRMRQANR
101: LLSEMRAMRV VPNTVTYNML IYGYFMHGDN GTALRVHEEM VKNGVELDTV TYNVLILGLC RDGKIKKAEH LFQQLDKPKL EPNASTFSML ILGHCKTQNS
201: ERALQLLNVM KKMWLPSEL

Best Arabidopsis Sequence Match ( AT4G26680.1 )
(BLAST)

001: MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.