Factsheet for TraesCS2A01G339000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G343000.1	Wheat	cytosol, plastid	86.52	94.62
TraesCS2D01G324100.1	Wheat	plastid	86.34	94.42
HORVU2Hr1G080360.2	Barley	mitochondrion	83.79	89.84
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	31.88	79.91
HORVU1Hr1G093590.2	Barley	cytosol	33.52	77.31
Os10t0363500-00	Rice	endoplasmic reticulum	66.48	71.29
Zm00001d030479_P001	Maize	plastid	61.02	66.47
GSMUA_Achr1P12600_001	Banana	extracellular	30.97	48.71
KRH44246	Soybean	cytosol	37.34	41.08
VIT_12s0057g00740.t01	Wine grape	mitochondrion	37.89	39.25
CDX94295	Canola	cytosol	12.57	38.98
PGSC0003DMT400015722	Potato	cytosol	35.52	36.79
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	35.34	36.6
AT4G26680.1	Thale cress	mitochondrion	33.7	35.51
CDX94298	Canola	mitochondrion	34.61	33.39
TraesCS6A01G371200.1	Wheat	plastid	22.59	20.77
TraesCS2A01G336700.1	Wheat	cytosol	22.59	20.36
TraesCS3A01G359100.1	Wheat	cytosol	15.12	20.24
TraesCS2A01G326700.1	Wheat	plastid	18.21	19.08
TraesCS3A01G201500.1	Wheat	cytosol, extracellular, mitochondrion, plastid	19.85	19.02
TraesCS1A01G160000.1	Wheat	mitochondrion	17.12	18.95
TraesCS2A01G114800.1	Wheat	plastid	18.21	18.59
TraesCS7A01G109000.1	Wheat	plastid	22.22	17.55
TraesCS5A01G128400.1	Wheat	plastid	21.31	17.41
TraesCS2A01G223300.1	Wheat	mitochondrion, plastid	24.04	17.17
TraesCS7A01G134800.1	Wheat	mitochondrion	20.4	16.67
TraesCS4A01G045400.1	Wheat	plastid	21.31	15.62
TraesCS7A01G360200.1	Wheat	mitochondrion	19.85	15.57
TraesCS4A01G023000.1	Wheat	plastid	16.03	14.99
Bra026410.1-P	Field mustard	mitochondrion	34.97	14.56
CDX89313	Canola	mitochondrion	35.15	14.26
TraesCS5A01G229600.1	Wheat	mitochondrion	15.3	13.55

Protein Annotations

EnsemblPlants:TraesCS2A01G339000.1	EnsemblPlantsGene:TraesCS2A01G339000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1580
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr2A:+:572811426..572813075

Molecular Weight (calculated)

60945.0 Da

IEP (calculated)

9.592

GRAVY (calculated)

-0.030

Length

549 amino acids

Sequence
(BLAST)

001: MSMNLRKKKE ICYRGKIVKD LLTHLTCDCE RRLPRRRSVG SGVNTPSPMR PARALPLPHF TLPPLAGEDL AFVTVLRAHL SSPEIAPSSL SGFLPQLNPL
101: RLSHLLLSPP RVAHDLLGSI LPSPPPPLPF ALLLHALTPR RSSELLASLL PSVSHHAFPE LLHHLILTAR LAAGSRGTGA AVPAVDVLFS ACARRNKLSQ
201: ATLTFRAMRA HGLLPRVESC NVFISAALRL KRPEIAVSFF REMRRCCISP NMYTVNMVLR AFCALGRVAD AAMVLDEMPD WGVDKTVVSF NTLIAAYCKE
301: HGGLEHALEL KKRMELEGLA PSEATYNTIL HVLCKEGRMH QANRFLSEMK AKRVVPNTVT YNTLIYGYVM HGDNGTAWRV HEGMVKNGVE LDIITYNALI
401: LGLCRDGKIK KAVHLFQQLD RSKLEPNAST FSALILGYCM AQNSERALQL LNVMKKSGFH PNYDTYKIVI STFCKNKDFE GAVDVMKELL EMCMAPDKAL
501: LHEFFEALSK AKKLHLAEGL QSADKGGKFI LSIYYTGDYR NNGEEKTAC

Best Arabidopsis Sequence Match ( AT4G26680.1 )
(BLAST)

001: MIRISIGVNR RLRYQFSSFA GYSGSENPRL FKTLGAANTP IPHRRNPEPK GQDLDFVNVA HSHLIQSDWD KLNKLSDHLD SFRVKNVLLK IQKDYLLSLE
101: FFNWAKTRNP GSHSLETHAI VLHTLTKNRK FKSAESILRD VLVNGGVDLP AKVFDALLYS YRECDSTPRV FDSLFKTFAH LKKFRNATDT FMQMKDYGFL
201: PTVESCNAYM SSLLGQGRVD IALRFYREMR RCKISPNPYT LNMVMSGYCR SGKLDKGIEL LQDMERLGFR ATDVSYNTLI AGHCEKGLLS SALKLKNMMG
301: KSGLQPNVVT FNTLIHGFCR AMKLQEASKV FGEMKAVNVA PNTVTYNTLI NGYSQQGDHE MAFRFYEDMV CNGIQRDILT YNALIFGLCK QAKTRKAAQF
401: VKELDKENLV PNSSTFSALI MGQCVRKNAD RGFELYKSMI RSGCHPNEQT FNMLVSAFCR NEDFDGASQV LREMVRRSIP LDSRTVHQVC NGLKHQGKDQ
501: LVKKLLQEME GKKFLQESFN N

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.