Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G136000.1 | Wheat | plastid | 98.81 | 98.81 |
| TraesCS5B01G127400.1 | Wheat | plastid | 98.51 | 98.51 |
| HORVU5Hr1G042300.1 | Barley | plastid | 93.75 | 88.36 |
| Os12t0152600-01 | Rice | plastid | 73.81 | 69.27 |
| Zm00001d023422_P001 | Maize | plastid | 71.58 | 67.18 |
| Zm00001d044707_P001 | Maize | plastid | 70.24 | 66.29 |
| EES09272 | Sorghum | plastid | 71.43 | 66.02 |
| Zm00001d000093_P001 | Maize | cytosol | 51.93 | 65.97 |
| Zm00001d052540_P001 | Maize | plastid | 69.64 | 64.91 |
| OQU78719 | Sorghum | cytosol | 71.43 | 62.83 |
| GSMUA_Achr6P35510_001 | Banana | cytosol | 49.26 | 47.22 |
| KRH16451 | Soybean | plastid | 40.48 | 39.59 |
| KRH18049 | Soybean | plastid | 40.33 | 39.45 |
| VIT_01s0011g04390.t01 | Wine grape | plastid | 41.37 | 38.72 |
| PGSC0003DMT400078379 | Potato | cytosol | 38.24 | 37.14 |
| Bra024554.1-P | Field mustard | cytosol | 18.15 | 36.09 |
| Solyc05g008560.1.1 | Tomato | mitochondrion | 39.73 | 35.41 |
| CDY04754 | Canola | cytosol | 12.65 | 35.12 |
| CDY21405 | Canola | cytosol | 21.88 | 34.75 |
| CDY04764 | Canola | cytosol | 18.3 | 34.75 |
| Bra024552.1-P | Field mustard | cytosol | 12.8 | 34.13 |
| AT1G22960.1 | Thale cress | mitochondrion | 34.38 | 32.17 |
| CDY04753 | Canola | mitochondrion, plastid | 17.86 | 28.85 |
| TraesCS2A01G326700.1 | Wheat | plastid | 21.13 | 27.1 |
| TraesCS4A01G023000.1 | Wheat | plastid | 23.21 | 26.58 |
| TraesCS3A01G359100.1 | Wheat | cytosol | 15.92 | 26.1 |
| TraesCS1A01G160000.1 | Wheat | mitochondrion | 18.75 | 25.4 |
| TraesCS7A01G109000.1 | Wheat | plastid | 26.19 | 25.32 |
| TraesCS5A01G229600.1 | Wheat | mitochondrion | 22.92 | 24.84 |
| TraesCS2A01G114800.1 | Wheat | plastid | 19.79 | 24.72 |
| TraesCS2A01G336700.1 | Wheat | cytosol | 22.02 | 24.3 |
| TraesCS2A01G223300.1 | Wheat | mitochondrion, plastid | 26.19 | 22.89 |
| TraesCS7A01G360200.1 | Wheat | mitochondrion | 23.81 | 22.86 |
| TraesCS6A01G371200.1 | Wheat | plastid | 20.09 | 22.61 |
| TraesCS4A01G045400.1 | Wheat | plastid | 24.85 | 22.3 |
| TraesCS7A01G134800.1 | Wheat | mitochondrion | 21.58 | 21.58 |
| TraesCS2A01G339000.1 | Wheat | cytosol | 17.41 | 21.31 |
| TraesCS3A01G201500.1 | Wheat | cytosol, extracellular, mitochondrion, plastid | 17.26 | 20.24 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G128400.1 | EnsemblPlantsGene:TraesCS5A01G128400 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF724 |
| PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | SEG:seg | SUPFAM:SSF81901 |
| TIGRFAMs:TIGR00756 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:286671961..286674093
Molecular Weight (calculated)
74211.4 Da
IEP (calculated)
7.266
GRAVY (calculated)
0.039
Length
672 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFPTRPCKS QAPAAVAAIC SLRPSSSSPA LIPSPYHDDN PFASLLTSDP PPPDPLRQVL ATGDVHGALR GLPGLARQLF RWAEGTPHGF PRSASAFAAV
101: LVPLAEARRN RSAYPVSLRA IQAGLLLPLI SLLLTYPLSP SSHHLLNFLL RMSTKFVPEC QAQDPAPTSC STQCLSAFQE MARQGVAPYV KVCNCVLSVL
201: CDAARWDDMR AVYSDMLQLG VEPSIVTYNT LLDSFCKAGR IDQAVMLLKD MEAQVAGCLP NDVTYNVVIS GLARNGELDK AAQLVDRMRL SKQASAFTYN
301: PLISGLLARG FVEKADALQQ EMQNDGIVPT VVTYNTLIHG LFKRGNVEAA ELKFLEMRAM GLQPDLITYN SLINGHCKAC NLKQALWLLG DLRRAGLAPT
401: VMTYNILIDG YCRLGNLGGA MRFKEEMRAE CCLPDVCTYT ILMNGSCKVK NIAMLREEMM PSGISSDTVT YNILIDGLCK AGSLKDAYVL WMKMVSDGLQ
501: LDCVTYTCLI HAHCKWGLLR KANNIFRGMV ASGLSPSAVT YTIFIHTYCR VGDLDSAYGW FRKMLEEGVE PNEVTYNVLM NALCRIGRTE LAYQYFHEML
601: ERGLVPNKYT YTLLIDGNCK EGNWVEAVRL YCEMHQKGIH PDHCTHNALF KGFGEDHMHD TIQYLENVVL GA
101: LVPLAEARRN RSAYPVSLRA IQAGLLLPLI SLLLTYPLSP SSHHLLNFLL RMSTKFVPEC QAQDPAPTSC STQCLSAFQE MARQGVAPYV KVCNCVLSVL
201: CDAARWDDMR AVYSDMLQLG VEPSIVTYNT LLDSFCKAGR IDQAVMLLKD MEAQVAGCLP NDVTYNVVIS GLARNGELDK AAQLVDRMRL SKQASAFTYN
301: PLISGLLARG FVEKADALQQ EMQNDGIVPT VVTYNTLIHG LFKRGNVEAA ELKFLEMRAM GLQPDLITYN SLINGHCKAC NLKQALWLLG DLRRAGLAPT
401: VMTYNILIDG YCRLGNLGGA MRFKEEMRAE CCLPDVCTYT ILMNGSCKVK NIAMLREEMM PSGISSDTVT YNILIDGLCK AGSLKDAYVL WMKMVSDGLQ
501: LDCVTYTCLI HAHCKWGLLR KANNIFRGMV ASGLSPSAVT YTIFIHTYCR VGDLDSAYGW FRKMLEEGVE PNEVTYNVLM NALCRIGRTE LAYQYFHEML
601: ERGLVPNKYT YTLLIDGNCK EGNWVEAVRL YCEMHQKGIH PDHCTHNALF KGFGEDHMHD TIQYLENVVL GA
001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.