CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04754	Canola	cytosol	56.03	97.93
Bra024552.1-P	Field mustard	cytosol	56.03	94.05
CDY04764	Canola	cytosol	77.31	92.37
AT1G22960.1	Thale cress	mitochondrion	73.76	43.45
KRH16451	Soybean	plastid	52.01	32.02
KRH18049	Soybean	plastid	51.54	31.73
Zm00001d000093_P001	Maize	cytosol	37.83	30.25
VIT_01s0011g04390.t01	Wine grape	plastid	51.06	30.08
PGSC0003DMT400078379	Potato	cytosol	48.7	29.77
CDY04753	Canola	mitochondrion, plastid	28.13	28.61
Solyc05g008560.1.1	Tomato	mitochondrion	49.65	27.85
GSMUA_Achr6P35510_001	Banana	cytosol	43.03	25.96
CDY10136	Canola	cytosol	21.04	24.32
Os12t0152600-01	Rice	plastid	40.43	23.88
EES09272	Sorghum	plastid	40.66	23.66
Zm00001d023422_P001	Maize	plastid	39.48	23.32
Zm00001d052540_P001	Maize	plastid	39.72	23.3
HORVU5Hr1G042300.1	Barley	plastid	38.77	23.0
Zm00001d044707_P001	Maize	plastid	38.3	22.75
OQU78719	Sorghum	cytosol	40.66	22.51
TraesCS5B01G127400.1	Wheat	plastid	34.75	21.88
TraesCS5A01G128400.1	Wheat	plastid	34.75	21.88
TraesCS5D01G136000.1	Wheat	plastid	34.52	21.73
CDY51888	Canola	cytosol, mitochondrion, plastid	23.88	20.45
CDX94295	Canola	cytosol	8.51	20.34
CDX78962	Canola	cytosol	23.64	20.2
CDY57780	Canola	endoplasmic reticulum	24.11	17.74
CDX86757	Canola	endoplasmic reticulum, extracellular	23.88	17.57
CDY04100	Canola	plastid	18.68	17.21
CDY17453	Canola	mitochondrion	18.68	17.21
CDX87212	Canola	plastid	25.3	16.69
CDY36644	Canola	mitochondrion	24.59	16.43
CDX71231	Canola	mitochondrion	24.35	16.32
CDY30265	Canola	mitochondrion	27.66	16.03
CDY17611	Canola	cytosol	22.46	16.02
CDX74435	Canola	mitochondrion	27.42	15.57
CDX93473	Canola	mitochondrion	22.22	15.36
CDX94941	Canola	cytosol, plastid	22.22	15.28
CDX74507	Canola	cytosol	20.8	14.84
CDY11211	Canola	mitochondrion	25.77	14.71
CDY67116	Canola	cytosol	20.33	14.5
CDY31404	Canola	cytosol	25.3	14.44
CDY47261	Canola	plastid	24.82	14.4
CDY49798	Canola	mitochondrion	21.99	14.33
CDX79463	Canola	plastid	20.33	13.94
CDX93490	Canola	mitochondrion	19.62	13.83
CDX84733	Canola	plastid	19.86	13.68
CDX94959	Canola	mitochondrion	19.15	13.32
CDY03072	Canola	mitochondrion	22.7	13.04
CDX80791	Canola	mitochondrion	18.44	12.98
CDX71311	Canola	cytosol	21.28	12.88
CDY39141	Canola	mitochondrion	19.15	11.71
CDX82665	Canola	mitochondrion, plastid	18.44	11.26
CDY42586	Canola	plastid	15.84	10.81
CDY50117	Canola	plastid	15.84	10.75
CDX94298	Canola	mitochondrion	12.77	9.49
CDX89313	Canola	mitochondrion	17.02	5.32

Protein Annotations

EnsemblPlants:CDY21405	EnsemblPlantsGene:GSBRNA2T00015785001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF724
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY21405	ProteinID:CDY21405.1	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI0004EDB3D9	UniProt:A0A078G4M3	MapMan:35.1	:	:

Description

BnaA09g30220DBnaA09g30220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4M3]

Coordinates

chrLK032120:-:517770..519272

Molecular Weight (calculated)

48604.8 Da

IEP (calculated)

8.407

GRAVY (calculated)

-0.362

Length

423 amino acids

Sequence
(BLAST)

001: MRRSGFPVTT YSFNPLIEGY CKQGLFDEAW EVVELMLDAG VSPTASTYNI YIRALWEFRR TDDARRVLLG MAAPDVVSYN TLMHGYVKLR KIREAFLLFG
101: ELIVRNIRPS VVTYNTLMDG LCESGDLETA QRLKAEMSRQ RIDPDVKTYT TLVKGFVKKG NLSMATATYD EMLEKGIKPD RYACTTRLVG ELQLGDKDKA
201: FRLQEEMVAK DHNARDLISY NVCIDGLCKV GDLEGAIEFQ RKIYRDGLVP DHVTYTTVIR AYLEKGRFKM AKVLYQEMLR KKLSPSVVTY FVLIHGHAKV
301: GRLQQAFQYS GEMEKRDIRP NVMTCNALLH GICKAGEIDE AYRYFRKMEE DGIRPNKYSY TMLINKNSDL GKWEEVVELY KEMLDKEIQP DAYTRWALFK
401: HLDKDHASRE TVLPASSLGG TQL

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.