CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36644	Canola	mitochondrion	96.99	96.68
Bra015229.1-P	Field mustard	mitochondrion	95.88	95.58
AT2G15630.1	Thale cress	mitochondrion	82.09	82.62
GSMUA_Achr8P16100_001	Banana	cytosol	23.61	54.58
KRH24548	Soybean	mitochondrion	53.41	54.09
VIT_12s0055g00970.t01	Wine grape	plastid	53.25	53.0
Solyc01g109060.2.1	Tomato	mitochondrion	50.08	51.13
KRH29553	Soybean	mitochondrion	35.18	50.68
PGSC0003DMT400066731	Potato	mitochondrion, plastid	49.6	50.65
OQU81794	Sorghum	mitochondrion, peroxisome	30.59	47.89
Os04t0477200-01	Rice	endoplasmic reticulum	32.33	44.84
HORVU2Hr1G082620.1	Barley	plastid	34.71	43.28
TraesCS2D01G336100.1	Wheat	plastid	35.66	42.94
TraesCS2A01G326700.1	Wheat	plastid	35.34	42.56
TraesCS2B01G355200.1	Wheat	plastid	35.18	42.37
Zm00001d003294_P001	Maize	plastid	34.87	41.98
CDX93473	Canola	mitochondrion	26.94	27.78
CDX94941	Canola	cytosol, plastid	26.78	27.48
CDY57780	Canola	endoplasmic reticulum	23.93	26.26
CDX86757	Canola	endoplasmic reticulum, extracellular	22.98	25.22
CDX84733	Canola	plastid	24.41	25.08
CDY11211	Canola	mitochondrion	29.0	24.7
CDX74507	Canola	cytosol	23.14	24.62
CDY67116	Canola	cytosol	23.14	24.62
CDY50117	Canola	plastid	24.09	24.4
CDY21405	Canola	cytosol	16.32	24.35
CDX94295	Canola	cytosol	6.81	24.29
CDX79463	Canola	plastid	23.61	24.15
CDY39141	Canola	mitochondrion	26.31	23.99
CDX93490	Canola	mitochondrion	22.66	23.83
CDY42586	Canola	plastid	23.3	23.71
CDY30265	Canola	mitochondrion	27.42	23.7
CDY31404	Canola	cytosol	27.58	23.48
CDX82665	Canola	mitochondrion, plastid	25.67	23.38
CDY04753	Canola	mitochondrion, plastid	15.37	23.32
CDY17611	Canola	cytosol	21.87	23.27
CDY49798	Canola	mitochondrion	23.77	23.11
CDX94959	Canola	mitochondrion	22.19	23.03
CDX74435	Canola	mitochondrion	27.1	22.95
CDY10136	Canola	cytosol	13.31	22.95
CDX94298	Canola	mitochondrion	20.6	22.85
CDY47261	Canola	plastid	25.99	22.5
CDY04764	Canola	cytosol	12.52	22.32
CDX71311	Canola	cytosol	24.56	22.17
CDY51888	Canola	cytosol, mitochondrion, plastid	17.27	22.06
CDX87212	Canola	plastid	22.19	21.84
CDX78962	Canola	cytosol	17.12	21.82
CDX80791	Canola	mitochondrion	20.76	21.8
CDY03072	Canola	mitochondrion	25.04	21.47
CDY17453	Canola	mitochondrion	14.58	20.04
CDY04100	Canola	plastid	14.26	19.61
CDY04754	Canola	cytosol	7.13	18.59
CDX89313	Canola	mitochondrion	21.71	10.13

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX71231	ProteinID:CDX71231	ProteinID:CDX71231.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00144816001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF918
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EF2EB1	SEG:seg

Description

BnaC07g05100D

Coordinates

chrLK031792:+:1557959..1560399

Molecular Weight (calculated)

71184.8 Da

IEP (calculated)

6.814

GRAVY (calculated)

-0.141

Length

631 amino acids

Sequence
(BLAST)

001: MRQFTLPCLL RHRISILSGA GYSRTAARLS SSTQSSTTEP ELSQPPISSD ILLDSIRSSQ WHFVEQITGK LTPSLISTTL LSLVKTPYLA LNFVNRIDLS
101: CLDFPTQCLA IAVVSKLSSP NPALQLLKEV ITSTSISVRA IFNELVLARD RLETKSTILL DLLVRCCCQL KIVDEAIECF YLMKQKGFDP KTETCNCILS
201: SLSRLDLTEK AWVFYADMYR MEIKSNIYTY NIMINVLCKE GKLKKAKGML AMMECFGVKP NIVTYNTLVQ GYSSRGRIEG ARMVIKEIIS KGFKPDLQTY
301: NPILSWMCSE GRASEVLKEM KELGLVPDSV SYNILIRGCS NKGDLETAFA YRDEMMREGF APTFYTYNTL IHGLFMENKI EAAEMLIKEI REKGISLDAV
401: TYNILINGYC QHGDAKKAFA LHDEMMTDGI APTQFTYTSL IYVLCRRRKM READELFENV VGKGMKPDLV MYNALIDGHC STGNMDRAFL LLKEMDKMRI
501: DPDDVTYNCL MRGLCGEGKF EEARELMGEM KRRGIKPDHI SYNTLISGYS KKGDTKQAFM VRDEMLSLGF NPTLLTYNAL LKSLSKNQDG RVAEELLMEI
601: KSEGITPNDS TYCSVVEAMS NLEQDAEKSD N

Best Arabidopsis Sequence Match ( AT2G15630.1 )
(BLAST)

001: MRRFTVPCIL RHRISILSGA GYSPAAARLS SLAQTSTPES VLPPITSEIL LESIRSSQWH IVEHVADKLT PSLVSTTLLS LVKTPNLAFN FVNHIDLYRL
101: DFQTQCLAIA VISKLSSPKP VTQLLKEVVT SRKNSIRNLF DELVLAHDRL ETKSTILFDL LVRCCCQLRM VDEAIECFYL MKEKGFYPKT ETCNHILTLL
201: SRLNRIENAW VFYADMYRME IKSNVYTFNI MINVLCKEGK LKKAKGFLGI MEVFGIKPTI VTYNTLVQGF SLRGRIEGAR LIISEMKSKG FQPDMQTYNP
301: ILSWMCNEGR ASEVLREMKE IGLVPDSVSY NILIRGCSNN GDLEMAFAYR DEMVKQGMVP TFYTYNTLIH GLFMENKIEA AEILIREIRE KGIVLDSVTY
401: NILINGYCQH GDAKKAFALH DEMMTDGIQP TQFTYTSLIY VLCRKNKTRE ADELFEKVVG KGMKPDLVMM NTLMDGHCAI GNMDRAFSLL KEMDMMSINP
501: DDVTYNCLMR GLCGEGKFEE ARELMGEMKR RGIKPDHISY NTLISGYSKK GDTKHAFMVR DEMLSLGFNP TLLTYNALLK GLSKNQEGEL AEELLREMKS
601: EGIVPNDSSF CSVIEAMSNL DAKKSDS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.