Factsheet for Zm00001d003294_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	peroxisome
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU81794	Sorghum	mitochondrion, peroxisome	72.33	94.04
TraesCS2B01G355200.1	Wheat	plastid	79.96	79.96
TraesCS2D01G336100.1	Wheat	plastid	79.58	79.58
TraesCS2A01G326700.1	Wheat	plastid	79.39	79.39
Os04t0477200-01	Rice	endoplasmic reticulum	68.89	79.34
HORVU2Hr1G082620.1	Barley	plastid	76.14	78.85
GSMUA_Achr8P16100_001	Banana	cytosol	30.92	59.34
VIT_12s0055g00970.t01	Wine grape	plastid	46.76	38.64
KRH24548	Soybean	mitochondrion	44.08	37.08
Solyc01g109060.2.1	Tomato	mitochondrion	42.75	36.25
PGSC0003DMT400066731	Potato	mitochondrion, plastid	42.18	35.76
Bra015229.1-P	Field mustard	mitochondrion	42.18	34.91
CDY36644	Canola	mitochondrion	42.18	34.91
CDX71231	Canola	mitochondrion	41.98	34.87
AT2G15630.1	Thale cress	mitochondrion	40.65	33.97
KRH29553	Soybean	mitochondrion	28.05	33.56
Zm00001d042911_P001	Maize	mitochondrion, plastid	22.71	29.02
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	26.53	28.72
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	26.53	28.72
Zm00001d039548_P001	Maize	mitochondrion	24.81	28.63
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	25.57	25.72
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	25.95	25.33
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	25.95	25.33
Zm00001d018528_P001	Maize	cytosol	26.72	24.1
Zm00001d000093_P001	Maize	cytosol	23.86	23.63
Zm00001d027800_P001	Maize	mitochondrion	27.86	22.5
Zm00001d045319_P001	Maize	plastid	29.58	22.43
Zm00001d010121_P001	Maize	plastid	29.2	22.14
Zm00001d023302_P001	Maize	mitochondrion	29.39	22.0
Zm00001d020436_P001	Maize	mitochondrion	25.19	20.79
Zm00001d009391_P001	Maize	cytosol	22.33	20.42
Zm00001d023422_P001	Maize	plastid	27.48	20.11
Zm00001d044707_P001	Maize	plastid	27.29	20.08
Zm00001d006478_P001	Maize	mitochondrion	28.24	19.87
Zm00001d048880_P001	Maize	mitochondrion	25.38	19.67
Zm00001d052540_P001	Maize	plastid	26.53	19.28
Zm00001d030479_P001	Maize	plastid	18.51	19.25
Zm00001d028107_P001	Maize	nucleus	24.24	17.79

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103646312	MapMan:35.1	UniProt:A0A1D6E8F9	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM16705.1	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF918	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00022170DC	EnsemblPlantsGene:Zm00001d003294	EnsemblPlants:Zm00001d003294_P001	EnsemblPlants:Zm00001d003294_T001	SEG:seg	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr2:+:39107875..39110040

Molecular Weight (calculated)

57511.2 Da

IEP (calculated)

7.887

GRAVY (calculated)

-0.016

Length

524 amino acids

Sequence
(BLAST)

001: MAPPTSPAAV AAAARASPTP AAALALFKSA LSADRALCPL SVLPHLSASP SLPHLLLTAS AAARPHATSL RLYAQLKSLS VPIPVASLHP LLSSLPSAPA
101: FALFADIYRL RLPLCTTTFN IMLRHLCATG KPVRALELLR QMPRPNAVTY NTVIAGFCAR GRVQAALEVM REMRERGGIA PDKYTYATLI SGWCKIGRME
201: DAVKVFDEML TKGEVAPSAV MYNALIGGYC DVGKLDVALQ YREDMVQRGI AMTVATYNLL MHALFMDARA SDAYAVLEEM QKNGFSPDVF TYNILINGYC
301: KEGNEKKALE VFEEMSQKGV RATAVTYTSL IYVFSRKGQV QETDRLFNVA VKKGIRPDVV MYNALINSHC TGGDMERAYE IMAEMEKKRI PPDDMTYNTL
401: MRGFCLLGRL DEARTLIDEM TKRGIQPDLV SYNTLISGYS MKGDIKDALR VRDEMMDKGF NPTLMTYNAL IQGLCKIRQG DDAENLMKEM VAKGITPDDS
501: TYISLIEGLT TEDERMAAAD AAKA

Best Arabidopsis Sequence Match ( AT2G15630.1 )
(BLAST)

001: MRRFTVPCIL RHRISILSGA GYSPAAARLS SLAQTSTPES VLPPITSEIL LESIRSSQWH IVEHVADKLT PSLVSTTLLS LVKTPNLAFN FVNHIDLYRL
101: DFQTQCLAIA VISKLSSPKP VTQLLKEVVT SRKNSIRNLF DELVLAHDRL ETKSTILFDL LVRCCCQLRM VDEAIECFYL MKEKGFYPKT ETCNHILTLL
201: SRLNRIENAW VFYADMYRME IKSNVYTFNI MINVLCKEGK LKKAKGFLGI MEVFGIKPTI VTYNTLVQGF SLRGRIEGAR LIISEMKSKG FQPDMQTYNP
301: ILSWMCNEGR ASEVLREMKE IGLVPDSVSY NILIRGCSNN GDLEMAFAYR DEMVKQGMVP TFYTYNTLIH GLFMENKIEA AEILIREIRE KGIVLDSVTY
401: NILINGYCQH GDAKKAFALH DEMMTDGIQP TQFTYTSLIY VLCRKNKTRE ADELFEKVVG KGMKPDLVMM NTLMDGHCAI GNMDRAFSLL KEMDMMSINP
501: DDVTYNCLMR GLCGEGKFEE ARELMGEMKR RGIKPDHISY NTLISGYSKK GDTKHAFMVR DEMLSLGFNP TLLTYNALLK GLSKNQEGEL AEELLREMKS
601: EGIVPNDSSF CSVIEAMSNL DAKKSDS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.