Factsheet for Zm00001d009391_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00885	Sorghum	cytosol, mitochondrion	92.5	92.5
TraesCS3A01G201500.1	Wheat	cytosol, extracellular, mitochondrion, plastid	75.74	75.74
TraesCS3D01G203500.2	Wheat	cytosol, mitochondrion	75.74	75.74
Os01t0546700-00	Rice	cytosol	78.71	75.67
TraesCS3B01G225400.1	Wheat	cytosol, mitochondrion	75.04	75.04
HORVU5Hr1G009510.3	Barley	cytosol	76.09	73.9
GSMUA_Achr5P09880_001	Banana	mitochondrion	47.12	40.42
Zm00001d039548_P001	Maize	mitochondrion	20.59	25.99
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	21.12	25.0
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	21.12	25.0
Zm00001d003294_P001	Maize	plastid	20.42	22.33
Zm00001d030479_P001	Maize	plastid	19.37	22.02
Zm00001d018528_P001	Maize	cytosol	22.16	21.86
Zm00001d042911_P001	Maize	mitochondrion, plastid	14.49	20.24
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	17.98	19.77
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	18.5	19.74
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	18.5	19.74
Zm00001d045319_P001	Maize	plastid	23.39	19.39
Zm00001d027800_P001	Maize	mitochondrion	21.64	19.11
Zm00001d010121_P001	Maize	plastid	23.04	19.1
Zm00001d000093_P001	Maize	cytosol	17.1	18.53
Zm00001d023302_P001	Maize	mitochondrion	22.51	18.43
Zm00001d048880_P001	Maize	mitochondrion	21.29	18.05
Zm00001d006478_P001	Maize	mitochondrion	22.69	17.45
Zm00001d020436_P001	Maize	mitochondrion	19.2	17.32
Zm00001d052540_P001	Maize	plastid	20.77	16.5
Zm00001d044707_P001	Maize	plastid	20.42	16.43
Zm00001d023422_P001	Maize	plastid	20.24	16.2
Zm00001d028107_P001	Maize	nucleus	17.28	13.87

Protein Annotations

EnsemblPlants:Zm00001d009391_P001	EnsemblPlants:Zm00001d009391_T001	EnsemblPlantsGene:Zm00001d009391	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF657	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:AQK91807.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI000220ABE7	UniProt:K7USP7	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr8:+:61818189..61819910

Molecular Weight (calculated)

63273.4 Da

IEP (calculated)

7.967

GRAVY (calculated)

0.095

Length

573 amino acids

Sequence
(BLAST)

001: MSKALSRIPS STLTSLLPRS LNPHVAVVDL IAIHLTAVTD DAKPVNFTYL LPYLGHDELT AVVLRAGHSQ PLRTLRFLLA LPPPLQPSPP HLAFLAHSLA
101: SSRLFSHALD ALSHLIRLHP RHDLLPTLLL ASATAPHPSL PGLLVKALLR HARLRDAFRS ALRATAAGAP PDAAAFNALL AALSRANRFD ELWAARGAMA
201: RAGVRPDART FNILVAALCR GEDAERAYGF LEELEEQGFE PDVVTYNTLL AGYCRKGRLQ DALHLFDVMP HRRVPPDLVS HTILMDGLCK AWRLKDARRM
301: FDRMVHGGLR PDAVAYSVLI TGYCNEGQLK EARSLLMEMA GSGLLDIAFA LRVVVQGHVK FGKLLTCLNM VAPLRKYGIV IPSQSYSCLI GALCEDMRPN
401: AARGLLQWMI EDGHCPSLQM YNMIVDCFCR CDNPKEALDV KVEMTSREVK PNYNTYQTLI ICLCRLGKSL SGQSVMVEMI ESDFHPNEAI CTALVCGFCK
501: EGDLDRGELI VKLFALDFQI RCNESYTALM RTYCETRSTA DSLALQDRML ELGFVPNSET CRSIIYGLSR SSG

Best Arabidopsis Sequence Match ( AT5G40400.1 )
(BLAST)

001: MKNLVSNLRF FSSYSSSIVP RCSNIPKPIL NPLYNLLPQS QNPSKIVDVI CSTLNHSDYS VLLPNLRDEV KSLIPHLGYP EISRVLLRFQ SDASRAITFF
101: KWVKFDLGKR PNVGNYCLLL HILVSSKKFP LAMQFLCELI ELTSKKEEVD VFRVLVSATD ECNWDPVVFD MLVKGYLKLG LVEEGFRVFR EVLDSGFSVS
201: VVTCNHLLNG LLKLDLMEDC WQVYSVMCRV GIHPNTYTFN ILTNVFCNDS NFREVDDFLE KMEEEGFEPD LVTYNTLVSS YCRRGRLKEA FYLYKIMYRR
301: RVVPDLVTYT SLIKGLCKDG RVREAHQTFH RMVDRGIKPD CMSYNTLIYA YCKEGMMQQS KKLLHEMLGN SVVPDRFTCK VIVEGFVREG RLLSAVNFVV
401: ELRRLKVDIP FEVCDFLIVS LCQEGKPFAA KHLLDRIIEE EGHEAKPETY NNLIESLSRC DAIEEALVLK GKLKNQNQVL DAKTYRALIG CLCRIGRNRE
501: AESLMAEMFD SEVKPDSFIC GALVYGYCKE LDFDKAERLL SLFAMEFRIF DPESYNSLVK AVCETGCGYK KALELQERMQ RLGFVPNRLT CKYLIQVLEQ
601: PSLPNHLPEN

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.