Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d000093_P001 | Maize | cytosol | 73.17 | 98.49 |
Zm00001d023422_P001 | Maize | plastid | 88.9 | 88.41 |
OQU78719 | Sorghum | cytosol | 89.47 | 83.38 |
Zm00001d052540_P001 | Maize | plastid | 78.23 | 77.25 |
Os12t0152600-01 | Rice | plastid | 73.17 | 72.77 |
TraesCS5D01G136000.1 | Wheat | plastid | 66.43 | 70.39 |
TraesCS5A01G128400.1 | Wheat | plastid | 66.29 | 70.24 |
TraesCS5B01G127400.1 | Wheat | plastid | 66.15 | 70.09 |
HORVU5Hr1G042300.1 | Barley | plastid | 70.08 | 69.99 |
GSMUA_Achr6P35510_001 | Banana | cytosol | 49.16 | 49.93 |
KRH16451 | Soybean | plastid | 41.99 | 43.52 |
KRH18049 | Soybean | plastid | 41.29 | 42.79 |
VIT_01s0011g04390.t01 | Wine grape | plastid | 42.84 | 42.48 |
Bra024554.1-P | Field mustard | cytosol | 19.38 | 40.83 |
PGSC0003DMT400078379 | Potato | cytosol | 38.76 | 39.88 |
CDY04764 | Canola | cytosol | 19.38 | 38.98 |
Bra024552.1-P | Field mustard | cytosol | 13.62 | 38.49 |
CDY21405 | Canola | cytosol | 22.75 | 38.3 |
Solyc05g008560.1.1 | Tomato | mitochondrion | 39.19 | 37.0 |
CDY04754 | Canola | cytosol | 12.5 | 36.78 |
AT1G22960.1 | Thale cress | mitochondrion | 35.53 | 35.24 |
CDY04753 | Canola | mitochondrion, plastid | 17.98 | 30.77 |
Zm00001d039548_P001 | Maize | mitochondrion | 18.26 | 28.63 |
Zm00001d027800_P001 | Maize | mitochondrion | 25.14 | 27.58 |
Zm00001d003294_P001 | Maize | plastid | 20.08 | 27.29 |
Zm00001d042911_P001 | Maize | mitochondrion, plastid | 15.45 | 26.83 |
Zm00001d007125_P001 | Maize | endoplasmic reticulum, plastid | 19.66 | 26.07 |
Zm00001d007127_P001 | Maize | endoplasmic reticulum, plastid | 18.96 | 25.91 |
Zm00001d007129_P001 | Maize | endoplasmic reticulum, plastid | 19.52 | 25.88 |
Zm00001d003397_P001 | Maize | endoplasmic reticulum, extracellular | 17.42 | 25.62 |
Zm00001d003396_P001 | Maize | endoplasmic reticulum, extracellular | 17.42 | 25.62 |
Zm00001d010121_P001 | Maize | plastid | 24.86 | 25.62 |
Zm00001d018528_P001 | Maize | cytosol | 20.79 | 25.47 |
Zm00001d045319_P001 | Maize | plastid | 24.72 | 25.47 |
Zm00001d020436_P001 | Maize | mitochondrion | 22.61 | 25.35 |
Zm00001d023302_P001 | Maize | mitochondrion | 24.58 | 25.0 |
Zm00001d006478_P001 | Maize | mitochondrion | 24.16 | 23.09 |
Zm00001d048880_P001 | Maize | mitochondrion | 21.91 | 23.08 |
Zm00001d030479_P001 | Maize | plastid | 15.31 | 21.63 |
Zm00001d028107_P001 | Maize | nucleus | 20.51 | 20.45 |
Zm00001d009391_P001 | Maize | cytosol | 16.43 | 20.42 |
Protein Annotations
Gene3D:1.25.40.10 | EntrezGene:103651688 | MapMan:35.1 | UniProt:A0A1D6NQW5 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | InterPro:IPR002885 | InterPro:IPR011990 | ProteinID:ONM42320.1 | PFAM:PF13041 | PFAM:PF13812 |
PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF724 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 |
InterPro:TPR-like_helical_dom_sf | UniParc:UPI0004DEC38B | EnsemblPlantsGene:Zm00001d044707 | EnsemblPlants:Zm00001d044707_P001 | EnsemblPlants:Zm00001d044707_T001 | SEG:seg |
Description
ZIM-transcription factor 17Pentatricopeptide repeat-containing protein mitochondrial
Coordinates
chr3:-:235518135..235520273
Molecular Weight (calculated)
78958.6 Da
IEP (calculated)
6.883
GRAVY (calculated)
0.065
Length
712 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFNIPHCKA QAPVAAVVAA ISSIRFSSSL PALVPPPPPL HDENPFAALL ASEPPPPEPL RQVLATGDVH SALRGLPGLA RQLFRWAETT PCGFPRSASA
101: FAAVLIPLAR ANHIRAAYPV SLRALHLDLL LPLVSLLSAP LSTAPRSLLS LLLRLSTKYS KECKARDATL DTCSTLCLSA FREMASHGVA PDVKDCNRVL
201: RVLRDAARWD DICAVHEEML ELGIEPSIVT YNTLLDSFLK EGRKDKVAML LKEMETRGSG CLPNDVTYNV VITGLTRKGD LEEAAELVEG MRLSKKASSF
301: TYNPLITGLL ARGCVKKVYD LQLEMENEGI MPTVVTYNAM IHGLLQSGLV EAAQVKFAEM RAMGLLPDVI TYNSLLNGYC KAGNLKEALL LFGDLRRAGL
401: APTVLTYNIL IDGYCRLGDL EEARILKEEM GEQGCLPNVC TYTILMKGSL NVRSLAMARE FFDEMLSKGL QPDCFAYNTR ICAELILGDI ARAFELREVL
501: MLEGISSDTV TYNILIHGLC KTGNLKDAKE LQMKMVSNGL QPDCITYTCL IHAHCERGLL REARKIFNNM ISDGLLPSAV TFTVIIHAYC RRGNLYSAYG
601: WFRKMLEEGV EPNEITYNVL IHALCRMGRT QLASHHFHEM LERGLVANKY TYTLLIDGNC KVGNWEDAMR FYFEMHQNGI HPDYLTHKAL LKGFDGHVHH
701: TIEYLDNVIL GE
101: FAAVLIPLAR ANHIRAAYPV SLRALHLDLL LPLVSLLSAP LSTAPRSLLS LLLRLSTKYS KECKARDATL DTCSTLCLSA FREMASHGVA PDVKDCNRVL
201: RVLRDAARWD DICAVHEEML ELGIEPSIVT YNTLLDSFLK EGRKDKVAML LKEMETRGSG CLPNDVTYNV VITGLTRKGD LEEAAELVEG MRLSKKASSF
301: TYNPLITGLL ARGCVKKVYD LQLEMENEGI MPTVVTYNAM IHGLLQSGLV EAAQVKFAEM RAMGLLPDVI TYNSLLNGYC KAGNLKEALL LFGDLRRAGL
401: APTVLTYNIL IDGYCRLGDL EEARILKEEM GEQGCLPNVC TYTILMKGSL NVRSLAMARE FFDEMLSKGL QPDCFAYNTR ICAELILGDI ARAFELREVL
501: MLEGISSDTV TYNILIHGLC KTGNLKDAKE LQMKMVSNGL QPDCITYTCL IHAHCERGLL REARKIFNNM ISDGLLPSAV TFTVIIHAYC RRGNLYSAYG
601: WFRKMLEEGV EPNEITYNVL IHALCRMGRT QLASHHFHEM LERGLVANKY TYTLLIDGNC KVGNWEDAMR FYFEMHQNGI HPDYLTHKAL LKGFDGHVHH
701: TIEYLDNVIL GE
001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.