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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • mitochondrion 2
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d000093_P001 Maize cytosol 73.17 98.49
Zm00001d023422_P001 Maize plastid 88.9 88.41
OQU78719 Sorghum cytosol 89.47 83.38
Zm00001d052540_P001 Maize plastid 78.23 77.25
Os12t0152600-01 Rice plastid 73.17 72.77
TraesCS5D01G136000.1 Wheat plastid 66.43 70.39
TraesCS5A01G128400.1 Wheat plastid 66.29 70.24
TraesCS5B01G127400.1 Wheat plastid 66.15 70.09
HORVU5Hr1G042300.1 Barley plastid 70.08 69.99
GSMUA_Achr6P35510_001 Banana cytosol 49.16 49.93
KRH16451 Soybean plastid 41.99 43.52
KRH18049 Soybean plastid 41.29 42.79
VIT_01s0011g04390.t01 Wine grape plastid 42.84 42.48
Bra024554.1-P Field mustard cytosol 19.38 40.83
PGSC0003DMT400078379 Potato cytosol 38.76 39.88
CDY04764 Canola cytosol 19.38 38.98
Bra024552.1-P Field mustard cytosol 13.62 38.49
CDY21405 Canola cytosol 22.75 38.3
Solyc05g008560.1.1 Tomato mitochondrion 39.19 37.0
CDY04754 Canola cytosol 12.5 36.78
AT1G22960.1 Thale cress mitochondrion 35.53 35.24
CDY04753 Canola mitochondrion, plastid 17.98 30.77
Zm00001d039548_P001 Maize mitochondrion 18.26 28.63
Zm00001d027800_P001 Maize mitochondrion 25.14 27.58
Zm00001d003294_P001 Maize plastid 20.08 27.29
Zm00001d042911_P001 Maize mitochondrion, plastid 15.45 26.83
Zm00001d007125_P001 Maize endoplasmic reticulum, plastid 19.66 26.07
Zm00001d007127_P001 Maize endoplasmic reticulum, plastid 18.96 25.91
Zm00001d007129_P001 Maize endoplasmic reticulum, plastid 19.52 25.88
Zm00001d003397_P001 Maize endoplasmic reticulum, extracellular 17.42 25.62
Zm00001d003396_P001 Maize endoplasmic reticulum, extracellular 17.42 25.62
Zm00001d010121_P001 Maize plastid 24.86 25.62
Zm00001d018528_P001 Maize cytosol 20.79 25.47
Zm00001d045319_P001 Maize plastid 24.72 25.47
Zm00001d020436_P001 Maize mitochondrion 22.61 25.35
Zm00001d023302_P001 Maize mitochondrion 24.58 25.0
Zm00001d006478_P001 Maize mitochondrion 24.16 23.09
Zm00001d048880_P001 Maize mitochondrion 21.91 23.08
Zm00001d030479_P001 Maize plastid 15.31 21.63
Zm00001d028107_P001 Maize nucleus 20.51 20.45
Zm00001d009391_P001 Maize cytosol 16.43 20.42
Protein Annotations
Gene3D:1.25.40.10EntrezGene:103651688MapMan:35.1UniProt:A0A1D6NQW5GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:IPR002885InterPro:IPR011990ProteinID:ONM42320.1PFAM:PF13041PFAM:PF13812
PFscan:PS51375PANTHER:PTHR24015PANTHER:PTHR24015:SF724InterPro:Pentatricopeptide_repeatSUPFAM:SSF81901TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sfUniParc:UPI0004DEC38BEnsemblPlantsGene:Zm00001d044707EnsemblPlants:Zm00001d044707_P001EnsemblPlants:Zm00001d044707_T001SEG:seg
Description
ZIM-transcription factor 17Pentatricopeptide repeat-containing protein mitochondrial
Coordinates
chr3:-:235518135..235520273
Molecular Weight (calculated)
78958.6 Da
IEP (calculated)
6.883
GRAVY (calculated)
0.065
Length
712 amino acids
Sequence
(BLAST)
001: MLFNIPHCKA QAPVAAVVAA ISSIRFSSSL PALVPPPPPL HDENPFAALL ASEPPPPEPL RQVLATGDVH SALRGLPGLA RQLFRWAETT PCGFPRSASA
101: FAAVLIPLAR ANHIRAAYPV SLRALHLDLL LPLVSLLSAP LSTAPRSLLS LLLRLSTKYS KECKARDATL DTCSTLCLSA FREMASHGVA PDVKDCNRVL
201: RVLRDAARWD DICAVHEEML ELGIEPSIVT YNTLLDSFLK EGRKDKVAML LKEMETRGSG CLPNDVTYNV VITGLTRKGD LEEAAELVEG MRLSKKASSF
301: TYNPLITGLL ARGCVKKVYD LQLEMENEGI MPTVVTYNAM IHGLLQSGLV EAAQVKFAEM RAMGLLPDVI TYNSLLNGYC KAGNLKEALL LFGDLRRAGL
401: APTVLTYNIL IDGYCRLGDL EEARILKEEM GEQGCLPNVC TYTILMKGSL NVRSLAMARE FFDEMLSKGL QPDCFAYNTR ICAELILGDI ARAFELREVL
501: MLEGISSDTV TYNILIHGLC KTGNLKDAKE LQMKMVSNGL QPDCITYTCL IHAHCERGLL REARKIFNNM ISDGLLPSAV TFTVIIHAYC RRGNLYSAYG
601: WFRKMLEEGV EPNEITYNVL IHALCRMGRT QLASHHFHEM LERGLVANKY TYTLLIDGNC KVGNWEDAMR FYFEMHQNGI HPDYLTHKAL LKGFDGHVHH
701: TIEYLDNVIL GE
Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)
001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.