CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16451	Soybean	plastid	93.6	93.6
VIT_01s0011g04390.t01	Wine grape	plastid	62.45	59.75
PGSC0003DMT400078379	Potato	cytosol	55.46	55.06
Bra024554.1-P	Field mustard	cytosol	26.49	53.85
Solyc05g008560.1.1	Tomato	mitochondrion	56.62	51.59
CDY21405	Canola	cytosol	31.73	51.54
Bra024552.1-P	Field mustard	cytosol	18.78	51.19
CDY04764	Canola	cytosol	26.35	51.13
CDY04754	Canola	cytosol	16.89	47.93
Zm00001d000093_P001	Maize	cytosol	36.39	47.26
GSMUA_Achr6P35510_001	Banana	cytosol	47.74	46.79
AT1G22960.1	Thale cress	mitochondrion	46.72	44.71
Os12t0152600-01	Rice	plastid	43.52	41.76
Zm00001d044707_P001	Maize	plastid	42.79	41.29
EES09272	Sorghum	plastid	43.38	40.99
Zm00001d023422_P001	Maize	plastid	42.36	40.64
HORVU5Hr1G042300.1	Barley	plastid	41.92	40.39
TraesCS5B01G127400.1	Wheat	plastid	39.45	40.33
TraesCS5A01G128400.1	Wheat	plastid	39.45	40.33
Zm00001d052540_P001	Maize	plastid	41.92	39.94
TraesCS5D01G136000.1	Wheat	plastid	39.01	39.88
CDY04753	Canola	mitochondrion, plastid	24.02	39.66
OQU78719	Sorghum	cytosol	42.65	38.35
KRG99196	Soybean	cytosol	23.29	30.3
KRH14574	Soybean	plastid	26.64	28.59
KRH29211	Soybean	cytosol	23.87	28.13
KRH50360	Soybean	cytosol, extracellular, plastid	22.71	28.06
KRH02112	Soybean	extracellular, mitochondrion	21.69	27.49
KRH51875	Soybean	cytosol	22.71	27.46
KRH34922	Soybean	cytosol	17.9	26.8
KRH45820	Soybean	cytosol, mitochondrion, plastid	28.82	26.68
KRH24548	Soybean	mitochondrion	24.16	26.65
KRH17313	Soybean	mitochondrion	18.2	26.21
KRH54581	Soybean	mitochondrion	19.8	25.56
KRG89236	Soybean	plastid	28.82	25.45
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	17.18	25.43
KRH13392	Soybean	cytosol	21.4	25.04
KRH33556	Soybean	cytosol	7.57	24.88
KRH72966	Soybean	mitochondrion	22.27	24.88
KRH42458	Soybean	plastid	26.93	24.63
KRH20741	Soybean	cytosol	20.96	24.53
KRG90304	Soybean	cytosol	19.65	24.06
KRH29553	Soybean	mitochondrion	15.28	23.97
KRH56553	Soybean	plastid	20.96	23.0
KRH44246	Soybean	cytosol	16.59	22.85
KRH58559	Soybean	plastid	19.21	22.53
KRH40170	Soybean	mitochondrion	22.71	22.51
KRH49758	Soybean	plastid	21.98	21.45
KRG93154	Soybean	plastid	23.44	16.86

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100787792	MapMan:35.1	EMBL:ACUP02008024	EnsemblPlantsGene:GLYMA_13G034900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1LXD3	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH18049	ProteinID:KRH18049	ProteinID:KRH18049.1
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF724
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233B0F0	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:10844174..10850275

Molecular Weight (calculated)

78370.5 Da

IEP (calculated)

8.906

GRAVY (calculated)

0.029

Length

687 amino acids

Sequence
(BLAST)

001: MTLSVRASSK PFLTLNEARF LFPFSFFSFS TLQYNNKFLF HAAVAEPKLL VRVLNTVRNR PVVALRFFRW AERQTGFKRS EISYSVILDI LARNGLMRSA
101: YCVMEKVVSV KMENGVIDVV SSSEVSMPSV KLILDLLLWI YVKKSLLEKC LLVFYKMVSK GLLPDVKNCN RVLRLLRDRD NNIDVAREVY NVMVECGICP
201: TVVTYNTMLD SFCKKGMVQE ALQLLFQMQA MGCSPNDVTY NVLVNGLSHS GEMEQAKELI QDMLRLGLEV SVYTYDPLIR GYCEKGQIEE ASRLGEEMLS
301: RGAVPTVVTY NTIMYGLCKW GRVSDARKLL DVMVNKNLMP DLVSYNTLIY GYTRLGNIGE AFLLFAELRY RSLAPSVVTY NTLIDGLCRL GDLDVAMRLK
401: DEMIKHGPDP DVFTFTTFVR GFCKMGNLPM AKELFDEMLN RGLQPDRFAY ITRIVGELKL GDPSKAFGMQ EEMLARGFPP DLITYNVFID GLHKLGNLKE
501: ASELVKKMLY NGLVPDHVTY TSIIHAHLMA GHLRKARALF LEMLSKGIFP SVVTYTVLIH SYAVRGRLKL AILHFFEMHE KGVHPNVITY NALINGLCKV
601: RKMDQAYNFF AEMQAKGISP NKYTYTILIN ENCNLGHWQE ALRLYKDMLD REIQPDSCTH RSLLKHLNKD YKLHVVRHLE NVIAAGE

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.