CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13392	Soybean	cytosol	93.36	93.36
VIT_14s0083g00550.t01	Wine grape	cytosol	64.57	64.24
Solyc04g050550.1.1	Tomato	cytosol	58.43	58.33
AT5G38730.1	Thale cress	cytosol	57.07	56.21
Bra028204.1-P	Field mustard	cytosol	56.39	55.82
CDX74507	Canola	cytosol	56.39	55.82
CDY67116	Canola	cytosol	56.39	55.82
GSMUA_Achr1P17710_001	Banana	cytosol	49.4	47.46
Os02t0827900-03	Rice	plastid	43.78	44.31
Zm00001d018528_P001	Maize	cytosol	43.1	43.55
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	43.95	43.0
TraesCS6A01G371200.1	Wheat	plastid	41.23	40.54
TraesCS6D01G355100.1	Wheat	plastid	41.06	40.37
TraesCS6B01G408200.1	Wheat	plastid	40.72	40.03
HORVU6Hr1G087430.7	Barley	cytosol	40.72	38.74
KRH17313	Soybean	mitochondrion	22.49	27.67
KRH72966	Soybean	mitochondrion	27.6	26.34
KRH29211	Soybean	cytosol	24.53	24.7
KRH44246	Soybean	cytosol	20.95	24.65
KRH24548	Soybean	mitochondrion	24.19	22.79
KRH02112	Soybean	extracellular, mitochondrion	20.78	22.51
KRH50360	Soybean	cytosol, extracellular, plastid	21.12	22.3
KRH51875	Soybean	cytosol	21.12	21.83
KRH54581	Soybean	mitochondrion	19.59	21.62
KRH16451	Soybean	plastid	25.21	21.54
KRH14574	Soybean	plastid	23.0	21.09
KRH18049	Soybean	plastid	24.53	20.96
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	16.52	20.91
KRG99196	Soybean	cytosol	18.57	20.64
KRH42458	Soybean	plastid	26.06	20.37
KRH34922	Soybean	cytosol	15.5	19.83
KRH56553	Soybean	plastid	21.12	19.81
KRH58559	Soybean	plastid	19.76	19.8
KRH33556	Soybean	cytosol	6.98	19.62
KRG90304	Soybean	cytosol	18.4	19.25
KRG89236	Soybean	plastid	24.87	18.77
KRH29553	Soybean	mitochondrion	13.8	18.49
KRH45820	Soybean	cytosol, mitochondrion, plastid	23.34	18.46
KRH40170	Soybean	mitochondrion	21.64	18.33
KRH49758	Soybean	plastid	20.44	17.05
KRG93154	Soybean	plastid	20.78	12.77

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102664664	MapMan:35.1	EMBL:ACUP02008301	EnsemblPlantsGene:GLYMA_13G197700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7M0R4	EnsemblPlants:KRH20741	ProteinID:KRH20741	ProteinID:KRH20741.1
ProteinID:KRH20742.1	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF17177	InterPro:PPR_long
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF279	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00023CF410	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:31177213..31178976

Molecular Weight (calculated)

67601.4 Da

IEP (calculated)

8.833

GRAVY (calculated)

-0.185

Length

587 amino acids

Sequence
(BLAST)

001: MVLIGNHNQF VDSLCAFVVK GHWGDLSKVK NVSALTSSTI HQVLLQLSLY GYGLSYSFPF FKWLDSIPHY SHSLQCSWAM IHILTEHKHF KTAQHMLEKI
101: AHKDFLSSPS VLTTLVRTHD NQEVNSQVLS WLVIHYAKSK MTQDAIQVFE QMRLHEVKPH LHACTVLLNS LLKDGVTHMV WKIYKKMVQV GVVPNTYIYN
201: CLFHACSKAG DVERAEQLLN EMDVKGLLPD IFTYNTLISL YCKKGMHYEA LSIQNRMERE GINLDIVSYN SLIYRFCKEG RMREAMRMFS EIKNATPNHV
301: TYTTLIDGYC KTNELEEALK MREMMEAKGL YPGVVTFNSI LRKLCQDGRI RDANKLLNEM SERKIQADNI TCNTLINAYC KIGDLKSALK FKNKLLEAGL
401: KPDPFTYKAL IHGFCKTNEL ERAKELMFSM LDAGFTPSYC TYSWIVDGYN KKDNMDSVLA LPDEFLSRGL CLDVSVYRAL IRRSCKVERV ECAERLFNHM
501: EGKGISGESV IYTSLAYAYW KAGNVRAASS MLEEMARRRL MITVKLYRCF STSDAHENKV SQFFWNHVVD RGLMSRNTMY KIQQKLI

Best Arabidopsis Sequence Match ( AT5G38730.1 )
(BLAST)

001: MVNLLSANRE ALIAQSICAT VLKGNWKNIL KHKVDSGLLK SAITTQVISE LSLFSGYGGP SLSWSFFIWT DSLPSSKHSL QSSWKMILIL TKHKHFKTAH
101: QLLDKLAQRE LLSSPLVLRS LVGGVSEDPE DVSHVFSWLM IYYAKAGMIN DSIVVFEQIR SCGLKPHLQA CTVLLNSLVK QRLTDTVWKI FKKMVKLGVV
201: ANIHVYNVLV HACSKSGDPE KAEKLLSEME EKGVFPDIFT YNTLISVYCK KSMHFEALSV QDRMERSGVA PNIVTYNSFI HGFSREGRMR EATRLFREIK
301: DDVTANHVTY TTLIDGYCRM NDIDEALRLR EVMESRGFSP GVVTYNSILR KLCEDGRIRE ANRLLTEMSG KKIEPDNITC NTLINAYCKI EDMVSAVKVK
401: KKMIESGLKL DMYSYKALIH GFCKVLELEN AKEELFSMIE KGFSPGYATY SWLVDGFYNQ NKQDEITKLL EEFEKRGLCA DVALYRGLIR RICKLEQVDY
501: AKVLFESMEK KGLVGDSVIF TTMAYAYWRT GKVTEASALF DVMYNRRLMV NLKLYKSISA SYAGDNDVLR FFWSHVGDRC LISKSILREM NRSEVL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g38730 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.