CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50360	Soybean	cytosol, extracellular, plastid	95.42	97.48
KRH02112	Soybean	extracellular, mitochondrion	90.32	94.65
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	66.2	81.03
VIT_06s0004g04770.t01	Wine grape	plastid	58.27	58.79
PGSC0003DMT400058577	Potato	plastid	53.7	54.37
AT4G11690.1	Thale cress	endoplasmic reticulum	51.41	51.59
Bra040883.1-P	Field mustard	endoplasmic reticulum	51.41	50.78
CDY57780	Canola	endoplasmic reticulum	51.23	50.61
CDX86757	Canola	endoplasmic reticulum, extracellular	50.7	50.09
Zm00001d042911_P001	Maize	mitochondrion, plastid	31.69	43.9
Os05t0583950-00	Rice	mitochondrion	31.51	43.66
OQU87837	Sorghum	plastid	31.34	43.41
TraesCS3D01G353400.1	Wheat	cytosol	29.75	41.22
GSMUA_Achr6P34120_001	Banana	cytosol	35.74	40.85
HORVU3Hr1G086290.19	Barley	plastid	29.23	40.79
TraesCS3A01G359100.1	Wheat	cytosol	29.05	40.24
KRH24548	Soybean	mitochondrion	28.52	26.0
KRH29211	Soybean	cytosol	26.58	25.9
KRH17313	Soybean	mitochondrion	20.95	24.95
KRH72966	Soybean	mitochondrion	26.76	24.72
KRH33556	Soybean	cytosol	8.98	24.4
KRH44246	Soybean	cytosol	21.13	24.05
KRH29553	Soybean	mitochondrion	18.13	23.52
KRG99196	Soybean	cytosol	21.83	23.48
KRH54581	Soybean	mitochondrion	21.3	22.74
KRH18049	Soybean	plastid	27.46	22.71
KRH14574	Soybean	plastid	25.35	22.5
KRH16451	Soybean	plastid	26.76	22.13
KRH56553	Soybean	plastid	23.77	21.57
KRH20741	Soybean	cytosol	21.83	21.12
KRG89236	Soybean	plastid	28.87	21.08
KRH34922	Soybean	cytosol	16.73	20.7
KRH40170	Soybean	mitochondrion	25.0	20.49
KRH58559	Soybean	plastid	21.13	20.48
KRH13392	Soybean	cytosol	21.13	20.44
KRH45820	Soybean	cytosol, mitochondrion, plastid	25.88	19.81
KRG90304	Soybean	cytosol	19.54	19.79
KRH49758	Soybean	plastid	23.94	19.32
KRH42458	Soybean	plastid	25.35	19.17
KRG93154	Soybean	plastid	22.36	13.3

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100819169	MapMan:35.1	EMBL:ACUP02003395	EnsemblPlantsGene:GLYMA_06G033500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0080156
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7KSV4	EnsemblPlants:KRH51875	ProteinID:KRH51875
ProteinID:KRH51875.1	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF362
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002961EC5	:	:

Description

hypothetical protein

Coordinates

chr6:+:2584914..2590455

Molecular Weight (calculated)

63602.6 Da

IEP (calculated)

8.863

GRAVY (calculated)

0.113

Length

568 amino acids

Sequence
(BLAST)

001: MSQSHEALIL IQKMVKVPPT KALLLFNTAT YQGLQHTSHS ISFILNHLLS SGMLPQAQSL ILRLISGRIP SSLMLQLTQA HFTPCLTYTP LYDTIVNAYV
101: HSHSTDQALT FLHHMIHEGH VPLSNTFNNL MCLLIRSNYF DKAWWIFNEL KSKVVLDAYS FGIMIKGCCE AGYFVKGFRL LAMLEEFGLS PNVVIYTTLI
201: DGCCKYGNVM LAKNLFCKMD RLGLVPNPHT YSVLMNGFFK QGLQREGFQM YENMKRSGIV PNAYAYNCLI SEYCNGGMVD KAFKVFAEMR EKGIACGVMT
301: YNILIGGLCR GKKFGEAVKL VHKVNKVGLS PNIVTYNILI NGFCDVGKMD TAVRLFNQLK SSGLSPTLVT YNTLIAGYSK VENLAGALDL VKEMEERCIA
401: PSKVTYTILI DAFARLNYTE KACEMHSLME KSGLVPDVYT YSVLIHGLCV HGNMKEASKL FKSLGEMHLQ PNSVIYNTMI HGYCKEGSSY RALRLLNEMV
501: HSGMVPNVAS FCSTIGLLCR DEKWKEAELL LGQMINSGLK PSVSLYKMVH KVKEILGFHG MKPKEMRS

Best Arabidopsis Sequence Match ( AT4G11690.1 )
(BLAST)

001: MAAKSQKTLV LLANLIKFPP LKAFSLLNSP NFHEFQHTHE SISILLRLLL SGNLFSHAQS LLLQVISGKI HSQFFTSSSL LHYLTESETS KTKFRLYEVI
101: INSYVQSQSL NLSISYFNEM VDNGFVPGSN CFNYLLTFVV GSSSFNQWWS FFNENKSKVV LDVYSFGILI KGCCEAGEIE KSFDLLIELT EFGFSPNVVI
201: YTTLIDGCCK KGEIEKAKDL FFEMGKLGLV ANERTYTVLI NGLFKNGVKK QGFEMYEKMQ EDGVFPNLYT YNCVMNQLCK DGRTKDAFQV FDEMRERGVS
301: CNIVTYNTLI GGLCREMKLN EANKVVDQMK SDGINPNLIT YNTLIDGFCG VGKLGKALSL CRDLKSRGLS PSLVTYNILV SGFCRKGDTS GAAKMVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMEKAIQL RLSMEELGLV PDVHTYSVLI HGFCIKGQMN EASRLFKSMV EKNCEPNEVI YNTMILGYCK EGSSYRALKL
501: LKEMEEKELA PNVASYRYMI EVLCKERKSK EAERLVEKMI DSGIDPSTSI LSLISRAKND SHVSSK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g11690 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0D6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.