CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g03510.t01	Wine grape	mitochondrion	62.34	65.52
PGSC0003DMT400024895	Potato	cytosol	42.34	59.17
GSMUA_AchrUn_...	Banana	mitochondrion	48.75	54.26
TraesCS4B01G280500.1	Wheat	plastid	47.5	51.79
TraesCS4A01G023000.1	Wheat	plastid	47.19	51.45
KXG40115	Sorghum	cytosol	34.22	50.69
CDY11211	Canola	mitochondrion	58.28	50.34
Bra005695.1-P	Field mustard	mitochondrion	58.12	50.2
PGSC0003DMT400003372	Potato	mitochondrion	56.25	49.32
AT5G01110.2	Thale cress	cytosol, plastid	58.12	49.14
CDX80791	Canola	mitochondrion	45.78	48.75
TraesCS4D01G279000.1	Wheat	mitochondrion	48.59	47.92
Zm00001d027800_P001	Maize	mitochondrion	47.97	47.3
HORVU4Hr1G074200.9	Barley	mitochondrion	49.06	46.04
Os03t0165100-00	Rice	cytosol, mitochondrion	46.72	41.07
KRG99196	Soybean	cytosol	26.41	32.01
KRH34922	Soybean	cytosol	22.5	31.37
KRH24548	Soybean	mitochondrion	27.97	28.73
KRH29211	Soybean	cytosol	25.0	27.44
KRH54581	Soybean	mitochondrion	22.66	27.26
KRH17313	Soybean	mitochondrion	20.16	27.04
KRH33556	Soybean	cytosol	8.75	26.79
KRH18049	Soybean	plastid	28.59	26.64
KRH16451	Soybean	plastid	28.59	26.64
KRH45820	Soybean	cytosol, mitochondrion, plastid	30.62	26.42
KRH50360	Soybean	cytosol, extracellular, plastid	22.5	25.9
KRH72966	Soybean	mitochondrion	24.53	25.53
KRH02112	Soybean	extracellular, mitochondrion	21.56	25.46
KRH51875	Soybean	cytosol	22.5	25.35
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	17.5	24.14
KRH49758	Soybean	plastid	25.78	23.44
KRG89236	Soybean	plastid	28.28	23.26
KRH29553	Soybean	mitochondrion	15.78	23.06
KRH20741	Soybean	cytosol	21.09	23.0
KRH56553	Soybean	plastid	22.19	22.68
KRH13392	Soybean	cytosol	20.47	22.32
KRH44246	Soybean	cytosol	17.34	22.24
KRH42458	Soybean	plastid	25.94	22.1
KRG90304	Soybean	cytosol	19.22	21.93
KRH58559	Soybean	plastid	18.59	20.31
KRH40170	Soybean	mitochondrion	20.78	19.19
KRG93154	Soybean	plastid	23.91	16.02

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EMBL:ACUP02008505	EnsemblPlantsGene:GLYMA_14G034400	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	UniProt:I1M741
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH14574	ProteinID:KRH14574	ProteinID:KRH14574.1	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF770	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294848A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr14:+:2523336..2525277

Molecular Weight (calculated)

71576.1 Da

IEP (calculated)

7.067

GRAVY (calculated)

-0.018

Length

640 amino acids

Sequence
(BLAST)

001: MAKTLLTHNL SLQIHTLRPS SILLHQCHRN STHAGPTVHD LVRARNLPEA QSLLLRMIRK RGVSRPQLID SLLPSSPSST HTNATVLDLL IRTYVQSRKL
101: REGSEAFRLL RQKGFSVSIN ASNALLGALV KVGWVDLAWT VYEDVVASGT TVNVYTLNIM VNALCKEARF DKVKVFLSQM EGKGVFPDVV TYNTLINAHS
201: RQGNVAEAFE LLNSILGFYT YNAIVNGLCK KGDYVRARGV FDEMLGMGLS PDAATFNPLL VECCRKDDAC EAENVFDEML RYGVVPDLIS FGSVIGVFSR
301: NGLFDKALEY FGKMKGSGLV ADTVIYTILI DGYCRNGNVA EALAMRNEMV EKGCFMDVVT YNTLLNGLCR GKMLGDADEL FKEMVERGVF PDYYTLTTLI
401: HGYCKDGNMS RALGLFETMT QRSLKPDVVT YNTLMDGFCK IGEMEKAKEL WRDMVSRGIL PNYVSFSILI NGFCSLGLMG EAFRVWDEMI EKGVKPTLVT
501: CNTVIKGHLR AGNVLKANDF FEKMILEGVS PDCITYNTLI NGFVKEENFD RAFVLVNNME EKGLLPDVIT YNAILGGYCR QGRMREAEMV LRKMIDCGIN
601: PDKSTYTSLI NGHVSLDNLK EAFRFHDEML QRGFVPDDKF

Best Arabidopsis Sequence Match ( AT5G01110.2 )
(BLAST)

001: MNQTTVKVFK FQFLFSIEIK LSLSQPQKMI VHRIIPSRVK DPLTRFKPLK NLTTSSSPVF EPSSSSSSSS SSASFSVSDS FLVEKICFSL KQGNNNVRNH
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G01110]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.