Factsheet for TraesCS4A01G023000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G280500.1	Wheat	plastid	97.61	97.61
TraesCS4D01G279000.1	Wheat	mitochondrion	97.44	88.14
HORVU4Hr1G074200.9	Barley	mitochondrion	96.76	83.28
KXG40115	Sorghum	cytosol	58.6	79.63
Zm00001d027800_P001	Maize	mitochondrion	80.41	72.73
Os03t0165100-00	Rice	cytosol, mitochondrion	83.82	67.58
GSMUA_AchrUn_...	Banana	mitochondrion	52.13	53.22
PGSC0003DMT400024895	Potato	cytosol	41.4	53.06
VIT_06s0009g03510.t01	Wine grape	mitochondrion	52.13	50.25
KRH14574	Soybean	plastid	51.45	47.19
PGSC0003DMT400003372	Potato	mitochondrion	50.94	40.96
Bra005695.1-P	Field mustard	mitochondrion	47.02	37.25
CDY11211	Canola	mitochondrion	47.02	37.25
CDX80791	Canola	mitochondrion	37.99	37.1
AT5G01110.2	Thale cress	cytosol, plastid	47.19	36.59
TraesCS2A01G326700.1	Wheat	plastid	25.55	28.63
TraesCS3A01G359100.1	Wheat	cytosol	19.25	27.56
TraesCS7A01G109000.1	Wheat	plastid	31.86	26.91
TraesCS2A01G114800.1	Wheat	plastid	23.34	25.46
TraesCS1A01G160000.1	Wheat	mitochondrion	21.29	25.2
TraesCS7A01G360200.1	Wheat	mitochondrion	28.96	24.29
TraesCS4A01G045400.1	Wheat	plastid	30.66	24.03
TraesCS2A01G336700.1	Wheat	cytosol	24.53	23.65
TraesCS5A01G128400.1	Wheat	plastid	26.58	23.21
TraesCS5A01G229600.1	Wheat	mitochondrion	24.19	22.9
TraesCS2A01G223300.1	Wheat	mitochondrion, plastid	29.47	22.5
TraesCS6A01G371200.1	Wheat	plastid	22.32	21.94
TraesCS3A01G201500.1	Wheat	cytosol, extracellular, mitochondrion, plastid	20.44	20.94
TraesCS7A01G134800.1	Wheat	mitochondrion	21.98	19.2
TraesCS2A01G339000.1	Wheat	cytosol	14.99	16.03

Protein Annotations

EnsemblPlants:TraesCS4A01G023000.1	EnsemblPlantsGene:TraesCS4A01G023000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF648
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:16460586..16464080

Molecular Weight (calculated)

66593.9 Da

IEP (calculated)

6.995

GRAVY (calculated)

-0.223

Length

587 amino acids

Sequence
(BLAST)

001: MSRRRGASRL DIVSSLLASS PTPQPQVFDL LIRTYTQSRK PREAFEAFRL LLDRRVPIPA AASNALLAAL SRAGWPHLTA DAYRLLLSSD SEVNTYTLNI
101: MVHSHCKALQ FDKVDTVISE MEKRCVFPDV VTHNVMIDAR FRAGDVEAAM ALVDSMVSQG IKPGILTYNA VLKGLCRNGR WDKAREVFRA MDECGVAPDV
201: RSFNMLIGGF CRVKEPDEAM KFYKEMRRRG VTPDIVSFSC LIGLFARRGK MDRAAAYLRE MREFGLMPDG VIYTMVIGGY CRAGSMLEAL RVRDEMIGRG
301: CLPDVVTYNT LLNGLCKERR LSEAEELLTE MRERGVPPDL CTFTTLIHGY CREGNIEKAL QLFEMMLHER LTPDIVTYNT LIDGMCRQGD LGKANELWDD
401: MHSREIFPNH ITYSILIDSH CEKGQVDDAF GFLDEMINKG VVPNIMTYNS IIKGYCRSGN VLKGQQFLQK MRDAKVLPDL ITYNTLIHGY VKEEKMHEAF
501: NLLNMMENEK VQPDIVTYNM IINGFSVHGN MQEADWVYKK MGARGIEPDR YTYMSMINGH VAAGNSKESF QLHDEMLQKG FAPDDKF

Best Arabidopsis Sequence Match ( AT5G01110.2 )
(BLAST)

001: MNQTTVKVFK FQFLFSIEIK LSLSQPQKMI VHRIIPSRVK DPLTRFKPLK NLTTSSSPVF EPSSSSSSSS SSASFSVSDS FLVEKICFSL KQGNNNVRNH
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G01110]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.