Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11211 | Canola | mitochondrion | 81.51 | 83.27 |
| Bra005695.1-P | Field mustard | mitochondrion | 81.37 | 83.13 |
| CDX80791 | Canola | mitochondrion | 59.84 | 75.37 |
| VIT_06s0009g03510.t01 | Wine grape | mitochondrion | 49.67 | 61.74 |
| KRH14574 | Soybean | plastid | 49.14 | 58.12 |
| PGSC0003DMT400024895 | Potato | cytosol | 34.87 | 57.64 |
| PGSC0003DMT400003372 | Potato | mitochondrion | 52.18 | 54.11 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 39.63 | 52.17 |
| KXG40115 | Sorghum | cytosol | 27.08 | 47.45 |
| TraesCS4A01G023000.1 | Wheat | plastid | 36.59 | 47.19 |
| TraesCS4B01G280500.1 | Wheat | plastid | 36.2 | 46.68 |
| TraesCS4D01G279000.1 | Wheat | mitochondrion | 38.31 | 44.68 |
| Zm00001d027800_P001 | Maize | mitochondrion | 37.91 | 44.22 |
| HORVU4Hr1G074200.9 | Barley | mitochondrion | 38.84 | 43.11 |
| Os03t0165100-00 | Rice | cytosol, mitochondrion | 37.52 | 39.01 |
| AT2G15630.1 | Thale cress | mitochondrion | 24.83 | 29.98 |
| AT1G05670.3 | Thale cress | mitochondrion | 27.87 | 28.48 |
| AT1G09820.1 | Thale cress | mitochondrion, plastid | 22.06 | 27.56 |
| AT4G11690.1 | Thale cress | endoplasmic reticulum | 19.82 | 26.5 |
| AT2G01740.1 | Thale cress | cytosol | 18.76 | 25.4 |
| AT1G09680.1 | Thale cress | mitochondrion | 20.34 | 25.37 |
| AT1G11710.1 | Thale cress | mitochondrion | 21.8 | 25.11 |
| AT2G32630.1 | Thale cress | mitochondrion, plastid | 20.48 | 24.84 |
| AT5G39710.1 | Thale cress | mitochondrion | 24.17 | 24.5 |
| AT5G38730.1 | Thale cress | cytosol | 19.15 | 24.33 |
| AT1G22960.1 | Thale cress | mitochondrion | 22.99 | 24.23 |
| AT2G02150.1 | Thale cress | mitochondrion, plastid | 23.78 | 23.65 |
| AT2G16880.1 | Thale cress | cytosol | 23.12 | 23.55 |
| AT5G40400.2 | Thale cress | cytosol | 20.61 | 22.91 |
| AT4G26680.1 | Thale cress | mitochondrion | 15.72 | 22.84 |
| AT5G61400.1 | Thale cress | mitochondrion | 19.68 | 22.78 |
| AT4G19890.1 | Thale cress | plastid | 19.82 | 21.4 |
| AT2G19280.1 | Thale cress | mitochondrion | 18.36 | 20.06 |
| AT2G28050.1 | Thale cress | cytosol, plastid | 11.89 | 19.48 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:831824 | UniProt:A0A1P8BGD3 | ProteinID:AED90300.1 | EMBL:AK228473 |
| ProteinID:ANM70669.1 | ArrayExpress:AT5G01110 | EnsemblPlantsGene:AT5G01110 | RefSeq:AT5G01110 | TAIR:AT5G01110 | RefSeq:AT5G01110-TAIR-G |
| EnsemblPlants:AT5G01110.2 | Unigene:At.33961 | EMBL:BT005783 | ProteinID:CAB69839.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009451 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0032543 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 |
| RefSeq:NP_001332258.1 | RefSeq:NP_195731.1 | PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 |
| PANTHER:PTHR24015 | PANTHER:PTHR24015:SF770 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF48452 | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI000848A865 | SEG:seg | : | : | : |
Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G01110]
Coordinates
chr5:-:41768..44512
Molecular Weight (calculated)
85198.6 Da
IEP (calculated)
8.378
GRAVY (calculated)
-0.085
Length
757 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQTTVKVFK FQFLFSIEIK LSLSQPQKMI VHRIIPSRVK DPLTRFKPLK NLTTSSSPVF EPSSSSSSSS SSASFSVSDS FLVEKICFSL KQGNNNVRNH
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.