Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49798 | Canola | mitochondrion | 78.23 | 79.2 |
| GSMUA_Achr8P03570_001 | Banana | mitochondrion | 43.53 | 42.37 |
| AT5G38730.1 | Thale cress | cytosol | 21.92 | 24.16 |
| AT4G26680.1 | Thale cress | mitochondrion | 19.03 | 23.99 |
| AT1G09820.1 | Thale cress | mitochondrion, plastid | 21.31 | 23.1 |
| AT2G15630.1 | Thale cress | mitochondrion | 21.77 | 22.81 |
| AT1G09680.1 | Thale cress | mitochondrion | 20.55 | 22.24 |
| AT5G01110.2 | Thale cress | cytosol, plastid | 25.11 | 21.8 |
| AT2G32630.1 | Thale cress | mitochondrion, plastid | 20.55 | 21.63 |
| AT2G02150.1 | Thale cress | mitochondrion, plastid | 23.9 | 20.63 |
| AT2G01740.1 | Thale cress | cytosol | 17.5 | 20.57 |
| AT5G39710.1 | Thale cress | mitochondrion | 23.29 | 20.48 |
| AT2G16880.1 | Thale cress | cytosol | 23.14 | 20.46 |
| AT4G11690.1 | Thale cress | endoplasmic reticulum | 17.35 | 20.14 |
| AT1G05670.3 | Thale cress | mitochondrion | 22.37 | 19.84 |
| AT1G22960.1 | Thale cress | mitochondrion | 21.61 | 19.78 |
| AT5G40400.2 | Thale cress | cytosol | 20.4 | 19.68 |
| AT5G61400.1 | Thale cress | mitochondrion | 18.11 | 18.2 |
| AT4G19890.1 | Thale cress | plastid | 18.42 | 17.26 |
| AT2G19280.1 | Thale cress | mitochondrion | 17.2 | 16.31 |
| AT2G28050.1 | Thale cress | cytosol, plastid | 11.42 | 16.23 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:837715 | UniProt:A0A178W0Y7 | ProteinID:AAD30252.1 | ProteinID:AEE28773.1 |
| ArrayExpress:AT1G11710 | EnsemblPlantsGene:AT1G11710 | RefSeq:AT1G11710 | TAIR:AT1G11710 | RefSeq:AT1G11710-TAIR-G | EnsemblPlants:AT1G11710.1 |
| TAIR:AT1G11710.1 | EMBL:AY140003 | Unigene:At.42116 | EMBL:BT008412 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 |
| GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_172636.1 | ProteinID:OAP12169.1 | PFAM:PF01535 |
| PFAM:PF12854 | PFAM:PF13041 | PO:PO:0000037 | PO:PO:0001078 | PO:PO:0004507 | PO:PO:0007057 |
| PO:PO:0007611 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009046 | PO:PO:0009047 |
| PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF1586 | InterPro:Pentatricopeptide_repeat | UniProt:Q9SAA6 | TIGRFAMs:TIGR00756 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI000009E4AC | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein At1g11710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAA6]
Coordinates
chr1:+:3948714..3951359
Molecular Weight (calculated)
73987.8 Da
IEP (calculated)
7.595
GRAVY (calculated)
-0.049
Length
657 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGHVFSRRT SFLVRCFHVA KKFSNPEPED ILFSALCLNL RQRRWNTLHQ FSSSLTNPLI SRVLREFRSS PKLALEFYNW VLRSNTVAKS ENRFEASCVM
101: IHLLVGSRRF DDALSIMANL MSVEGEKLSP LHVLSGLIRS YQACGSSPDV FDSLVRACTQ NGDAQGAYEV IEQTRAEGFC VSVHALNNFM GCLLNVNEID
201: RFWKVYKEMD SLGYVENVNT FNLVIYSFCK ESKLFEALSV FYRMLKCGVW PNVVSFNMMI DGACKTGDMR FALQLLGKMG MMSGNFVSPN AVTYNSVING
301: FCKAGRLDLA ERIRGDMVKS GVDCNERTYG ALVDAYGRAG SSDEALRLCD EMTSKGLVVN TVIYNSIVYW LFMEGDIEGA MSVLRDMNSK NMQIDRFTQA
401: IVVRGLCRNG YVKEAVEFQR QISEKKLVED IVCHNTLMHH FVRDKKLACA DQILGSMLVQ GLSLDAISFG TLIDGYLKEG KLERALEIYD GMIKMNKTSN
501: LVIYNSIVNG LSKRGMAGAA EAVVNAMEIK DIVTYNTLLN ESLKTGNVEE ADDILSKMQK QDGEKSVSLV TFNIMINHLC KFGSYEKAKE VLKFMVERGV
601: VPDSITYGTL ITSFSKHRSQ EKVVELHDYL ILQGVTPHEH IYLSIVRPLL DRENGRP
101: IHLLVGSRRF DDALSIMANL MSVEGEKLSP LHVLSGLIRS YQACGSSPDV FDSLVRACTQ NGDAQGAYEV IEQTRAEGFC VSVHALNNFM GCLLNVNEID
201: RFWKVYKEMD SLGYVENVNT FNLVIYSFCK ESKLFEALSV FYRMLKCGVW PNVVSFNMMI DGACKTGDMR FALQLLGKMG MMSGNFVSPN AVTYNSVING
301: FCKAGRLDLA ERIRGDMVKS GVDCNERTYG ALVDAYGRAG SSDEALRLCD EMTSKGLVVN TVIYNSIVYW LFMEGDIEGA MSVLRDMNSK NMQIDRFTQA
401: IVVRGLCRNG YVKEAVEFQR QISEKKLVED IVCHNTLMHH FVRDKKLACA DQILGSMLVQ GLSLDAISFG TLIDGYLKEG KLERALEIYD GMIKMNKTSN
501: LVIYNSIVNG LSKRGMAGAA EAVVNAMEIK DIVTYNTLLN ESLKTGNVEE ADDILSKMQK QDGEKSVSLV TFNIMINHLC KFGSYEKAKE VLKFMVERGV
601: VPDSITYGTL ITSFSKHRSQ EKVVELHDYL ILQGVTPHEH IYLSIVRPLL DRENGRP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.