CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G11710.1	Thale cress	mitochondrion	79.2	78.23
GSMUA_Achr8P03570_001	Banana	mitochondrion	43.91	42.22
CDX94941	Canola	cytosol, plastid	23.88	25.2
CDX93473	Canola	mitochondrion	23.73	25.16
CDX74507	Canola	cytosol	22.96	25.13
CDY67116	Canola	cytosol	22.65	24.79
CDY36644	Canola	mitochondrion	23.57	24.17
CDX93490	Canola	mitochondrion	22.03	23.83
CDX71231	Canola	mitochondrion	23.11	23.77
CDX94959	Canola	mitochondrion	22.03	23.52
CDX94298	Canola	mitochondrion	20.34	23.2
CDY11211	Canola	mitochondrion	26.04	22.81
CDX84733	Canola	plastid	21.26	22.48
CDX79463	Canola	plastid	21.26	22.37
CDY30265	Canola	mitochondrion	25.12	22.33
CDY47261	Canola	plastid	24.96	22.22
CDY21405	Canola	cytosol	14.33	21.99
CDY17611	Canola	cytosol	20.03	21.92
CDX86757	Canola	endoplasmic reticulum, extracellular	19.41	21.91
CDX74435	Canola	mitochondrion	24.96	21.75
CDY50117	Canola	plastid	20.65	21.51
CDY57780	Canola	endoplasmic reticulum	18.95	21.39
CDY03072	Canola	mitochondrion	24.19	21.33
CDY31404	Canola	cytosol	24.19	21.19
CDX71311	Canola	cytosol	22.8	21.17
CDY42586	Canola	plastid	20.18	21.13
CDX80791	Canola	mitochondrion	19.41	20.97
CDY04753	Canola	mitochondrion, plastid	13.41	20.91
CDY17453	Canola	mitochondrion	14.64	20.7
CDY04100	Canola	plastid	14.64	20.7
CDY10136	Canola	cytosol	11.4	20.22
CDX87212	Canola	plastid	19.41	19.66
CDY04764	Canola	cytosol	10.48	19.21
CDY04754	Canola	cytosol	7.09	19.01
CDX94295	Canola	cytosol	5.08	18.64
CDY51888	Canola	cytosol, mitochondrion, plastid	13.87	18.22
CDX78962	Canola	cytosol	13.56	17.78
CDY39141	Canola	mitochondrion	18.03	16.91
CDX82665	Canola	mitochondrion, plastid	17.57	16.45
CDX89313	Canola	mitochondrion	21.11	10.13

Protein Annotations

EnsemblPlants:CDY49798	EnsemblPlantsGene:GSBRNA2T00093823001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1586
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY49798	ProteinID:CDY49798.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EE5EB4	UniProt:A0A078IL40	MapMan:35.1	:	:

Description

BnaCnng18110DBnaCnng18110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IL40]

Coordinates

chrLK032859:+:77583..79532

Molecular Weight (calculated)

72229.8 Da

IEP (calculated)

5.458

GRAVY (calculated)

0.091

Length

649 amino acids

Sequence
(BLAST)

001: MFAQVLFRRT RFLVVRSFHV AAKKFSNPPD PEDILFSSLC LNLRQRRWNA LHQLSPALTN PLVSRVLLQF RTSPKLALEF HNWFLGNNTV SETCFEASCV
101: MVHLLVESRR FDDALSVMAS LMSKLSPLDV LSGLIRSYEP CGSSPDVFDS LVRACTQNGD AEGACEVIEQ VRAEGFSVSV HALNNFMGCL INLNEIDWFW
201: SVYKEMDGLG YVENVNTFNL VIYSFCKECK LLEALSVFYR MLKRGVWPNV VSFNMMIDGA CKVGDMEFAL ELLGKMRVMS GGFVSPNDVT YNTVVNGFCK
301: IGRLDLAERI RGEMVKSGVE CNERTYGALV DAYGRCGSAD EALRLCDEMT SKGLAANTVV CNSLVYWLFM EGDVEGAMLV LSDMISKEVE VDRFTHAIVI
401: RGLCRNGYVE EAVKLQRGIK LEEDVVGYNT LMHHFVTERK MGCVGDQILG SMFVRGLSVD AVSFGTLIDG YLKEGKVEKA VEVYDGMIKM KKLPNLVIYN
501: SIVNGLSKRG LSGAAEAVVK AMESKDAVTY NTVLNESLKI GNVEEAVSVL SEMQKDDGEK LVSLVTYNIL INHLCKFGCC EKAKEVLKVM VERGVVPDSI
601: TYGTLITSFS KNRCGDEVVE VHDYMVLNGV RPHEQIYKSV VSPLLDGEP

Best Arabidopsis Sequence Match ( AT1G11710.1 )
(BLAST)

001: MFGHVFSRRT SFLVRCFHVA KKFSNPEPED ILFSALCLNL RQRRWNTLHQ FSSSLTNPLI SRVLREFRSS PKLALEFYNW VLRSNTVAKS ENRFEASCVM
101: IHLLVGSRRF DDALSIMANL MSVEGEKLSP LHVLSGLIRS YQACGSSPDV FDSLVRACTQ NGDAQGAYEV IEQTRAEGFC VSVHALNNFM GCLLNVNEID
201: RFWKVYKEMD SLGYVENVNT FNLVIYSFCK ESKLFEALSV FYRMLKCGVW PNVVSFNMMI DGACKTGDMR FALQLLGKMG MMSGNFVSPN AVTYNSVING
301: FCKAGRLDLA ERIRGDMVKS GVDCNERTYG ALVDAYGRAG SSDEALRLCD EMTSKGLVVN TVIYNSIVYW LFMEGDIEGA MSVLRDMNSK NMQIDRFTQA
401: IVVRGLCRNG YVKEAVEFQR QISEKKLVED IVCHNTLMHH FVRDKKLACA DQILGSMLVQ GLSLDAISFG TLIDGYLKEG KLERALEIYD GMIKMNKTSN
501: LVIYNSIVNG LSKRGMAGAA EAVVNAMEIK DIVTYNTLLN ESLKTGNVEE ADDILSKMQK QDGEKSVSLV TFNIMINHLC KFGSYEKAKE VLKFMVERGV
601: VPDSITYGTL ITSFSKHRSQ EKVVELHDYL ILQGVTPHEH IYLSIVRPLL DRENGRP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g11710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAA6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.