CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04100	Canola	plastid	95.86	95.86
Bra017434.1-P	Field mustard	cytosol, plastid	94.77	78.1
AT2G01740.1	Thale cress	cytosol	77.34	63.51
CDY10136	Canola	cytosol	19.17	24.04
CDX94295	Canola	cytosol	8.71	22.6
CDY17611	Canola	cytosol	25.93	20.07
CDY51888	Canola	cytosol, mitochondrion, plastid	21.57	20.04
CDX78962	Canola	cytosol	21.35	19.8
CDY04764	Canola	cytosol	14.81	19.21
CDY04754	Canola	cytosol	10.02	19.01
CDY21405	Canola	cytosol	17.21	18.68
CDX86757	Canola	endoplasmic reticulum, extracellular	22.0	17.57
CDY57780	Canola	endoplasmic reticulum	21.79	17.39
CDY47261	Canola	plastid	26.58	16.74
CDY03072	Canola	mitochondrion	26.8	16.71
CDY30265	Canola	mitochondrion	26.14	16.44
CDX74435	Canola	mitochondrion	26.36	16.24
CDY67116	Canola	cytosol	20.48	15.85
CDX74507	Canola	cytosol	20.48	15.85
CDX79463	Canola	plastid	21.13	15.72
CDX84733	Canola	plastid	20.91	15.64
CDX93490	Canola	mitochondrion	20.26	15.5
CDX87212	Canola	plastid	21.13	15.13
CDX94959	Canola	mitochondrion	20.04	15.13
CDX80791	Canola	mitochondrion	19.61	14.97
CDY31404	Canola	cytosol	23.97	14.84
CDY49798	Canola	mitochondrion	20.7	14.64
CDX71231	Canola	mitochondrion	20.04	14.58
CDY36644	Canola	mitochondrion	20.04	14.53
CDY11211	Canola	mitochondrion	23.09	14.3
CDX93473	Canola	mitochondrion	18.95	14.22
CDX71311	Canola	cytosol	21.57	14.16
CDX94941	Canola	cytosol, plastid	18.95	14.15
CDX94298	Canola	mitochondrion	16.78	13.53
CDY39141	Canola	mitochondrion	19.83	13.15
CDX82665	Canola	mitochondrion, plastid	19.39	12.84
CDY04753	Canola	mitochondrion, plastid	9.8	10.82
CDY42586	Canola	plastid	13.94	10.32
CDY50117	Canola	plastid	13.94	10.27
CDX89313	Canola	mitochondrion	19.39	6.58

Protein Annotations

EnsemblPlants:CDY17453	EnsemblPlantsGene:GSBRNA2T00095617001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF329
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY17453	ProteinID:CDY17453.1
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0004EE79F0	UniProt:A0A078FYN6	MapMan:35.1	:

Description

BnaC09g20840DBnaC09g20840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYN6]

Coordinates

chrLK032073:+:588039..589797

Molecular Weight (calculated)

50751.6 Da

IEP (calculated)

5.863

GRAVY (calculated)

0.008

Length

459 amino acids

Sequence
(BLAST)

001: MVREALQFLS RLRKSSSFPD PLTCNKHIHR LINSSCGVLS LKLVAYLVSR GYTPHRSSFN SIVSLLCKSG QVKFAEDIVR AMPKFGSLPD VVSYNSLIDG
101: YCRNGDVGNA SLVFERLRRR DGLAPNVVTF TCLIDGYCKS GVGLEVAVSL YEEMRRAGMS INVVTYSALI DGFCKQGEMQ RGEELYLQMR DDGLEPNSLV
201: YTAFIDGYFK NGDADNAMKF LAKMLNQGMK LDTAAYGVIV SGLCGNGKVK EAAEVVDDME KGGLLPDEMI LTTMMNGYFK SGRVKDAVKV YGEFIARGFE
301: PDVVALTALI DGLAKSGRLH EAVAYFCKER ANDVMYTVFM YTCWIAGLCK QGNLVGAFKL KTKMVQEGLE LDLLTYTTFI NGLASKGLMV EARQVFDEML
401: RREIRPDSAV FDLLIRAYEK EGDITAASEL FLDMQTRGLV TVVSDADCSK QCDNEVTCT

Best Arabidopsis Sequence Match ( AT2G01740.1 )
(BLAST)

001: MVREALQFLS RLRKSSNLPD PFTCNKHIHQ LINSNCGILS LKFLAYLVSR GYTPHRSSFN SVVSFVCKLG QVKFAEDIVH SMPRFGCEPD VISYNSLIDG
101: HCRNGDIRSA SLVLESLRAS HGFICKPDIV SFNSLFNGFS KMKMLDEVFV YMGVMLKCCS PNVVTYSTWI DTFCKSGELQ LALKSFHSMK RDALSPNVVT
201: FTCLIDGYCK AGDLEVAVSL YKEMRRVRMS LNVVTYTALI DGFCKKGEMQ RAEEMYSRMV EDRVEPNSLV YTTIIDGFFQ RGDSDNAMKF LAKMLNQGMR
301: LDITAYGVII SGLCGNGKLK EATEIVEDME KSDLVPDMVI FTTMMNAYFK SGRMKAAVNM YHKLIERGFE PDVVALSTMI DGIAKNGQLH EAIVYFCIEK
401: ANDVMYTVLI DALCKEGDFI EVERLFSKIS EAGLVPDKFM YTSWIAGLCK QGNLVDAFKL KTRMVQEGLL LDLLAYTTLI YGLASKGLMV EARQVFDEML
501: NSGISPDSAV FDLLIRAYEK EGNMAAASDL LLDMQRRGLV TAVSDADCSK QCGNEVNCS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g01740 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.