CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024554.1-P	Field mustard	cytosol	93.39	66.86
CDY04764	Canola	cytosol	96.28	65.82
CDY21405	Canola	cytosol	97.93	56.03
AT1G22960.1	Thale cress	mitochondrion	74.38	25.07
KRH16451	Soybean	plastid	48.35	17.03
KRH18049	Soybean	plastid	47.93	16.89
Zm00001d000093_P001	Maize	cytosol	36.78	16.82
PGSC0003DMT400078379	Potato	cytosol	47.52	16.62
VIT_01s0011g04390.t01	Wine grape	plastid	49.17	16.57
Solyc05g008560.1.1	Tomato	mitochondrion	49.17	15.78
GSMUA_Achr6P35510_001	Banana	cytosol	44.21	15.26
CDY10136	Canola	cytosol	22.31	14.75
EES09272	Sorghum	plastid	41.32	13.76
HORVU5Hr1G042300.1	Barley	plastid	40.08	13.6
Zm00001d052540_P001	Maize	plastid	40.08	13.45
Os12t0152600-01	Rice	plastid	39.26	13.27
Zm00001d023422_P001	Maize	plastid	38.43	12.99
TraesCS5A01G128400.1	Wheat	plastid	35.12	12.65
TraesCS5B01G127400.1	Wheat	plastid	35.12	12.65
TraesCS5D01G136000.1	Wheat	plastid	34.71	12.5
Zm00001d044707_P001	Maize	plastid	36.78	12.5
OQU78719	Sorghum	cytosol	39.26	12.43
CDY04100	Canola	plastid	19.42	10.24
CDY17453	Canola	mitochondrion	19.01	10.02
CDY51888	Canola	cytosol, mitochondrion, plastid	19.42	9.51
CDX78962	Canola	cytosol	19.42	9.49
CDY30265	Canola	mitochondrion	26.86	8.9
CDX74435	Canola	mitochondrion	26.86	8.72
CDX87212	Canola	plastid	22.31	8.42
CDX80791	Canola	mitochondrion	20.66	8.32
CDY17611	Canola	cytosol	19.83	8.09
CDY11211	Canola	mitochondrion	23.55	7.69
CDX71311	Canola	cytosol	21.9	7.58
CDX84733	Canola	plastid	19.01	7.49
CDY57780	Canola	endoplasmic reticulum	17.77	7.48
CDX79463	Canola	plastid	19.01	7.46
CDY31404	Canola	cytosol	22.73	7.42
CDY47261	Canola	plastid	22.31	7.41
CDX86757	Canola	endoplasmic reticulum, extracellular	17.36	7.3
CDX71231	Canola	mitochondrion	18.59	7.13
CDY36644	Canola	mitochondrion	18.59	7.11
CDY49798	Canola	mitochondrion	19.01	7.09
CDY03072	Canola	mitochondrion	20.25	6.66
CDX74507	Canola	cytosol	13.22	5.4
CDX93473	Canola	mitochondrion	13.22	5.23
CDY67116	Canola	cytosol	12.81	5.23
CDX94941	Canola	cytosol, plastid	13.22	5.2
CDX94295	Canola	cytosol	3.72	5.08
CDX93490	Canola	mitochondrion	12.4	5.0
CDY39141	Canola	mitochondrion	14.05	4.91
CDX94959	Canola	mitochondrion	11.98	4.77
CDX82665	Canola	mitochondrion, plastid	13.64	4.76
CDY42586	Canola	plastid	10.33	4.03
CDY50117	Canola	plastid	9.5	3.69
CDX89313	Canola	mitochondrion	11.16	2.0
CDX94298	Canola	mitochondrion	3.72	1.58
CDY04753	Canola	mitochondrion, plastid	0.83	0.48

Protein Annotations

EnsemblPlants:CDY04754	EnsemblPlantsGene:GSBRNA2T00119424001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF724
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY04754	ProteinID:CDY04754.1	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI0004EE29B9	MapMan:35.1	:	:	:

Description

BnaC05g18350D

Coordinates

chrLK031957:+:445728..447056

Molecular Weight (calculated)

28017.9 Da

IEP (calculated)

8.190

GRAVY (calculated)

-0.450

Length

242 amino acids

Sequence
(BLAST)

001: MATATYDEML EKGIKPDRYA CTTRLMVAKD HNARDLISYN VCIDGLCKVG DLERAIEFQR KIFRDGLVPD HVTYTTVIRA YLEKGRFKMA KVLYQEMLRK
101: KLSPSVVTYF VLIHGHAKVG RLQQAFQYSG EMEKRDIRPN VMTCNALLHG ICKAGEIDEA YRYFRKMEED GIPPNKYSYT MLINKNSDLG KWEEVVELYR
201: EMLDKEIEPD AYTRWALFKH LDKDHASRET VLPASSLGGT QL

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.