CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17453	Canola	mitochondrion	95.86	95.86
Bra017434.1-P	Field mustard	cytosol, plastid	96.73	79.71
AT2G01740.1	Thale cress	cytosol	76.47	62.79
CDY10136	Canola	cytosol	18.74	23.5
CDX94295	Canola	cytosol	8.28	21.47
CDY17611	Canola	cytosol	26.14	20.24
CDY51888	Canola	cytosol, mitochondrion, plastid	21.57	20.04
CDX78962	Canola	cytosol	21.35	19.8
CDY04754	Canola	cytosol	10.24	19.42
CDY04764	Canola	cytosol	14.81	19.21
CDY21405	Canola	cytosol	17.21	18.68
CDX86757	Canola	endoplasmic reticulum, extracellular	22.22	17.74
CDY57780	Canola	endoplasmic reticulum	22.0	17.57
CDY03072	Canola	mitochondrion	27.02	16.85
CDY47261	Canola	plastid	25.93	16.32
CDX79463	Canola	plastid	21.57	16.05
CDX84733	Canola	plastid	21.35	15.96
CDY30265	Canola	mitochondrion	25.27	15.89
CDX74435	Canola	mitochondrion	25.49	15.7
CDX74507	Canola	cytosol	20.26	15.68
CDY67116	Canola	cytosol	20.26	15.68
CDX87212	Canola	plastid	21.13	15.13
CDX93490	Canola	mitochondrion	19.61	15.0
CDX80791	Canola	mitochondrion	19.39	14.81
CDY31404	Canola	cytosol	23.75	14.71
CDX94959	Canola	mitochondrion	19.39	14.64
CDY49798	Canola	mitochondrion	20.7	14.64
CDY11211	Canola	mitochondrion	23.53	14.57
CDY36644	Canola	mitochondrion	19.83	14.38
CDX71231	Canola	mitochondrion	19.61	14.26
CDX71311	Canola	cytosol	20.91	13.73
CDX93473	Canola	mitochondrion	17.86	13.4
CDX94941	Canola	cytosol, plastid	17.86	13.33
CDX94298	Canola	mitochondrion	16.34	13.18
CDY39141	Canola	mitochondrion	19.83	13.15
CDX82665	Canola	mitochondrion, plastid	19.39	12.84
CDY04753	Canola	mitochondrion, plastid	9.8	10.82
CDY42586	Canola	plastid	13.94	10.32
CDY50117	Canola	plastid	13.94	10.27
CDX89313	Canola	mitochondrion	19.39	6.58

Protein Annotations

EnsemblPlants:CDY04100	EnsemblPlantsGene:GSBRNA2T00117737001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF329
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY04100	ProteinID:CDY04100.1
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0004EEBF54	MapMan:35.1	:	:

Description

BnaA09g18780D

Coordinates

chrLK031949:-:91916..93592

Molecular Weight (calculated)

50692.5 Da

IEP (calculated)

5.250

GRAVY (calculated)

0.043

Length

459 amino acids

Sequence
(BLAST)

001: MVGEALQFLS RLRKSSSFPD PLTFNKHIHR LIDSSCGVLS LKLVAYLVSR GYTPHRSSFN SIVSLLCRSG QVKFAEDIVR AMPKFGSLPD VVSYNSLIDG
101: YCRNGDVGNA SLVFERLRRR DGLAPNVVTF TCLIDGYCKS GVGLEVAVSL YEEMREVGMS INVVTYSALI DGFCKQGEMQ RGEELYLQMR EDGVEPNSLV
201: YTAFIDGYFK NGDADNAMKF LAKLLNQGMK LDTAAYGVIV SGLCGIGRVK EAAEVVDDME KGGLVPDEMI LTTMMNGYFK SGRVKDAVKV YGEFIARGFE
301: LDVVARTALI DGLAKSGRVH EAVAYFCKEK ANDVMYTVFM YTCWIAGLCK QGNLVGAFKL KTKMVQEGLE LDLLTYTTLI NGLASKGLMV EARQVFDEML
401: RREIRPDSAV FDLLIRAYEK EGDMTAASEL FLDMQARGLV TVVSDADCSK QCDNEVTCT

Best Arabidopsis Sequence Match ( AT2G01740.1 )
(BLAST)

001: MVREALQFLS RLRKSSNLPD PFTCNKHIHQ LINSNCGILS LKFLAYLVSR GYTPHRSSFN SVVSFVCKLG QVKFAEDIVH SMPRFGCEPD VISYNSLIDG
101: HCRNGDIRSA SLVLESLRAS HGFICKPDIV SFNSLFNGFS KMKMLDEVFV YMGVMLKCCS PNVVTYSTWI DTFCKSGELQ LALKSFHSMK RDALSPNVVT
201: FTCLIDGYCK AGDLEVAVSL YKEMRRVRMS LNVVTYTALI DGFCKKGEMQ RAEEMYSRMV EDRVEPNSLV YTTIIDGFFQ RGDSDNAMKF LAKMLNQGMR
301: LDITAYGVII SGLCGNGKLK EATEIVEDME KSDLVPDMVI FTTMMNAYFK SGRMKAAVNM YHKLIERGFE PDVVALSTMI DGIAKNGQLH EAIVYFCIEK
401: ANDVMYTVLI DALCKEGDFI EVERLFSKIS EAGLVPDKFM YTSWIAGLCK QGNLVDAFKL KTRMVQEGLL LDLLAYTTLI YGLASKGLMV EARQVFDEML
501: NSGISPDSAV FDLLIRAYEK EGNMAAASDL LLDMQRRGLV TAVSDADCSK QCGNEVNCS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g01740 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.