CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93490	Canola	mitochondrion	93.09	94.33
AT1G09680.1	Thale cress	mitochondrion	82.89	83.03
VIT_14s0006g00170.t01	Wine grape	mitochondrion	56.25	57.77
PGSC0003DMT400034430	Potato	cytosol	41.94	53.12
Solyc11g011410.1.1	Tomato	cytosol	41.28	52.29
KRH17313	Soybean	mitochondrion	39.64	50.52
KRH72966	Soybean	mitochondrion	50.82	50.24
GSMUA_Achr6P30640_001	Banana	mitochondrion, plastid	48.19	48.43
Os04t0463300-01	Rice	cytosol	5.26	45.71
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	34.54	43.39
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	34.54	43.39
TraesCS2B01G345200.1	Wheat	mitochondrion	41.78	41.71
TraesCS2A01G336700.1	Wheat	cytosol	41.61	41.54
TraesCS2D01G326200.1	Wheat	mitochondrion	41.28	41.22
EES10956	Sorghum	mitochondrion	40.46	40.07
HORVU2Hr1G080860.1	Barley	plastid	41.28	39.72
CDX74507	Canola	cytosol	24.51	25.13
CDY67116	Canola	cytosol	24.34	24.96
CDX94295	Canola	cytosol	6.91	23.73
CDX94941	Canola	cytosol, plastid	23.52	23.25
CDX86757	Canola	endoplasmic reticulum, extracellular	21.71	22.96
CDX93473	Canola	mitochondrion	22.86	22.71
CDY36644	Canola	mitochondrion	23.36	22.43
CDY17611	Canola	cytosol	21.88	22.43
CDX71231	Canola	mitochondrion	23.03	22.19
CDY57780	Canola	endoplasmic reticulum	20.89	22.09
CDY49798	Canola	mitochondrion	23.52	22.03
CDX84733	Canola	plastid	22.2	21.99
CDX79463	Canola	plastid	22.04	21.72
CDY10136	Canola	cytosol	12.83	21.31
CDY11211	Canola	mitochondrion	25.66	21.05
CDY30265	Canola	mitochondrion	25.16	20.96
CDY04753	Canola	mitochondrion, plastid	14.14	20.67
CDY03072	Canola	mitochondrion	25.0	20.65
CDX74435	Canola	mitochondrion	25.16	20.54
CDY47261	Canola	plastid	24.51	20.44
CDX94298	Canola	mitochondrion	18.91	20.21
CDY50117	Canola	plastid	20.56	20.06
CDY17453	Canola	mitochondrion	15.13	20.04
CDY39141	Canola	mitochondrion	22.53	19.8
CDX82665	Canola	mitochondrion, plastid	22.2	19.48
CDY04100	Canola	plastid	14.64	19.39
CDY42586	Canola	plastid	19.74	19.35
CDY21405	Canola	cytosol	13.32	19.15
CDX80791	Canola	mitochondrion	18.59	18.8
CDY31404	Canola	cytosol	22.37	18.35
CDX87212	Canola	plastid	19.24	18.25
CDY51888	Canola	cytosol, mitochondrion, plastid	14.8	18.22
CDX78962	Canola	cytosol	14.64	17.98
CDX71311	Canola	cytosol	19.9	17.31
CDY04764	Canola	cytosol	9.7	16.67
CDY04754	Canola	cytosol	4.77	11.98
CDX89313	Canola	mitochondrion	19.08	8.57

Protein Annotations

EnsemblPlants:CDX94959	EnsemblPlantsGene:GSBRNA2T00100443001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF923
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX94959	ProteinID:CDX94959.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EEE6B7	MapMan:35.1	:	:

Description

BnaC05g07120D

Coordinates

chrLK031886:+:348920..350746

Molecular Weight (calculated)

68377.2 Da

IEP (calculated)

8.792

GRAVY (calculated)

-0.116

Length

608 amino acids

Sequence
(BLAST)

001: MFRIKILRSS LSRSYPQAFS RTSSSLLSTW YSPESISPPP QADDDVDPIL VKLSIAIRDS YRDPSLELSP FTLSLSIRNL LPSLSSRHVL DLINRNPLSL
101: PHHSIFSFFK FISSQPGFRF TVDSYFAMAR FLAVHKMFDE AQSLIALVVS RKGKNSASSV FISVLETRGS DFLVDALMIA YTNAGFIPDA IQCFRLSRKH
201: KFTVPIRGCG SLLDRMMKVN PTETVWGFYM EILDAGYPSN VYVFNILMNK FCKECKMCDA QKVFDEITKR GLRPSVVSFN ILINGYCKAG NLDEGFRVKE
301: RMEKGGTRAD VFTYSALINA LCKENKMDGA HGLFDEMCER GLIPNDVVFT TLIHGHSRNG RIDLMKESYQ KMLSRGLQPD IVLYNTLVNG FCKNGDLVAT
401: RNVVDGMIHR GLRPDKVTYT TLIDGFCRGG DVDAALEIRK KMDQNGIELD RVGFSVLICG MCKEGRVVDA ERGLREMLRA GMKPDDVIYT MMMDAFCKKG
501: DVQTGFRLLK EMQRDGHVPS VVTYNVLLNG LCKLGQMKNA DVLLDAMLNI GVVPDDITFN ILLEGHHRHA NSSKHYIPKP EIGTVADLAS YKSLVSELYR
601: ASKEHRNR

Best Arabidopsis Sequence Match ( AT1G09680.1 )
(BLAST)

001: MFRIEILRCT LSQSHPQRFS RASFLLSTWY SQESVSAADN DDDPVLVKLS VAIRDSYKDP PLEFSSFTDC PSIRKVLPSL SVHHVVDLIN HNPLSLPQRS
101: IFAFFKFISS QPGFRFTVET YFVLARFLAV HEMFTEAQSL IELVVSRKGK NSASSVFISL VEMRVTPMCG FLVDALMITY TDLGFIPDAI QCFRLSRKHR
201: FDVPIRGCGN LLDRMMKLNP TGTIWGFYME ILDAGFPLNV YVFNILMNKF CKEGNISDAQ KVFDEITKRS LQPTVVSFNT LINGYCKVGN LDEGFRLKHQ
301: MEKSRTRPDV FTYSALINAL CKENKMDGAH GLFDEMCKRG LIPNDVIFTT LIHGHSRNGE IDLMKESYQK MLSKGLQPDI VLYNTLVNGF CKNGDLVAAR
401: NIVDGMIRRG LRPDKITYTT LIDGFCRGGD VETALEIRKE MDQNGIELDR VGFSALVCGM CKEGRVIDAE RALREMLRAG IKPDDVTYTM MMDAFCKKGD
501: AQTGFKLLKE MQSDGHVPSV VTYNVLLNGL CKLGQMKNAD MLLDAMLNIG VVPDDITYNT LLEGHHRHAN SSKRYIQKPE IGIVADLASY KSIVNELDRA
601: SKDHRNR

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At1g09680 [Source:UniProtKB/Swiss-Prot;Acc:O04491]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.