CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

plastid 2
mitochondrion 1
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57780	Canola	endoplasmic reticulum	94.09	94.09
AT4G11690.1	Thale cress	endoplasmic reticulum	79.13	80.39
VIT_06s0004g04770.t01	Wine grape	plastid	54.96	56.13
PGSC0003DMT400058577	Potato	plastid	50.43	51.69
KRH50360	Soybean	cytosol, extracellular, plastid	49.74	51.44
KRH51875	Soybean	cytosol	50.09	50.7
KRH02112	Soybean	extracellular, mitochondrion	46.78	49.63
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	37.74	46.77
Os05t0583950-00	Rice	mitochondrion	31.13	43.66
GSMUA_Achr6P34120_001	Banana	cytosol	37.04	42.86
OQU87837	Sorghum	plastid	30.26	42.44
Zm00001d042911_P001	Maize	mitochondrion, plastid	29.91	41.95
TraesCS3D01G353400.1	Wheat	cytosol	28.0	39.27
HORVU3Hr1G086290.19	Barley	plastid	27.3	38.57
TraesCS3A01G359100.1	Wheat	cytosol	27.3	38.29
CDY51888	Canola	cytosol, mitochondrion, plastid	22.96	26.72
CDX78962	Canola	cytosol	22.61	26.26
CDX74507	Canola	cytosol	24.87	24.11
CDY67116	Canola	cytosol	24.7	23.95
CDY21405	Canola	cytosol	17.57	23.88
CDX94295	Canola	cytosol	7.3	23.73
CDX94941	Canola	cytosol, plastid	25.04	23.41
CDX93473	Canola	mitochondrion	24.87	23.37
CDX84733	Canola	plastid	24.7	23.13
CDY36644	Canola	mitochondrion	25.39	23.06
CDX79463	Canola	plastid	24.7	23.01
CDX71231	Canola	mitochondrion	25.22	22.98
CDX93490	Canola	mitochondrion	23.48	22.5
CDY17611	Canola	cytosol	22.96	22.26
CDY04100	Canola	plastid	17.74	22.22
CDY17453	Canola	mitochondrion	17.57	22.0
CDX94959	Canola	mitochondrion	22.96	21.71
CDY10136	Canola	cytosol	13.74	21.58
CDY30265	Canola	mitochondrion	27.13	21.37
CDX87212	Canola	plastid	23.65	21.22
CDX74435	Canola	mitochondrion	27.48	21.21
CDY04753	Canola	mitochondrion, plastid	14.96	20.67
CDY47261	Canola	plastid	26.09	20.58
CDY04764	Canola	cytosol	12.52	20.34
CDY31404	Canola	cytosol	26.09	20.24
CDY39141	Canola	mitochondrion	24.17	20.09
CDX82665	Canola	mitochondrion, plastid	24.17	20.06
CDY11211	Canola	mitochondrion	25.74	19.97
CDY03072	Canola	mitochondrion	25.22	19.7
CDY49798	Canola	mitochondrion	21.91	19.41
CDX94298	Canola	mitochondrion	18.96	19.16
CDX71311	Canola	cytosol	22.96	18.88
CDX80791	Canola	mitochondrion	19.13	18.3
CDY04754	Canola	cytosol	7.3	17.36
CDY50117	Canola	plastid	18.61	17.18
CDY42586	Canola	plastid	18.09	16.77
CDX89313	Canola	mitochondrion	19.3	8.2

Protein Annotations

EnsemblPlants:CDX86757	EnsemblPlantsGene:GSBRNA2T00145477001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF362
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX86757	ProteinID:CDX86757.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EE75C4	MapMan:35.1	:	:

Description

BnaA09g21470D

Coordinates

chrLK031847:-:473903..475690

Molecular Weight (calculated)

63906.8 Da

IEP (calculated)

7.834

GRAVY (calculated)

-0.052

Length

575 amino acids

Sequence
(BLAST)

001: MAVKAQKTLI LLANLIKVPP LKAFSLLNSS NLHGVQHTHE SFSVLLHLLL SGNLLPHAQY LLLQAITRRI HSQSFTPSSL LRYLTHSETS KPNSRLYEVI
101: INAYIQSQSL DSALSYFTEM IDKGLVPGSN CFNNLLTFVS GSSSFDEFWS FFNENKGRVV LDVYSFGIAI KACCESGEID KSFHLLGELR ANGFSPNVVI
201: YTTLIDGCCK KGELEKAKAL FFEMETIGLV ANERTYTVLI HGLFKNGAKK QGFETYEKMK EDGVLPNLYT YNCVMNQLCK DGRTKDAFKV FDEMRERGVS
301: CNVVTYNTLI GGLCGEMNAS EACKLMEQMM SDGINPNLIT YNTLIDGFCN MGKLGKALSL CRDLKSRGMS MSVVSYNILV SGFCKKGDTS GAAKIVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMERAIQL RASMENLGLV PDVHTYSVLI HGFCIKGQMN EASRLFRSMV EKMVEPNEVI YNTMILGYCR EGSSYRALRL
501: LREMGDKELA PNVASYSYLV DVLCKEKKMK EAEDLVEKMI GSGMDPSASV CNMISSAKNG SLVAQTIDKS CLNVT

Best Arabidopsis Sequence Match ( AT4G11690.1 )
(BLAST)

001: MAAKSQKTLV LLANLIKFPP LKAFSLLNSP NFHEFQHTHE SISILLRLLL SGNLFSHAQS LLLQVISGKI HSQFFTSSSL LHYLTESETS KTKFRLYEVI
101: INSYVQSQSL NLSISYFNEM VDNGFVPGSN CFNYLLTFVV GSSSFNQWWS FFNENKSKVV LDVYSFGILI KGCCEAGEIE KSFDLLIELT EFGFSPNVVI
201: YTTLIDGCCK KGEIEKAKDL FFEMGKLGLV ANERTYTVLI NGLFKNGVKK QGFEMYEKMQ EDGVFPNLYT YNCVMNQLCK DGRTKDAFQV FDEMRERGVS
301: CNIVTYNTLI GGLCREMKLN EANKVVDQMK SDGINPNLIT YNTLIDGFCG VGKLGKALSL CRDLKSRGLS PSLVTYNILV SGFCRKGDTS GAAKMVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMEKAIQL RLSMEELGLV PDVHTYSVLI HGFCIKGQMN EASRLFKSMV EKNCEPNEVI YNTMILGYCK EGSSYRALKL
501: LKEMEEKELA PNVASYRYMI EVLCKERKSK EAERLVEKMI DSGIDPSTSI LSLISRAKND SHVSSK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g11690 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0D6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.