CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51875	Soybean	cytosol	97.48	95.42
KRH02112	Soybean	extracellular, mitochondrion	92.27	94.65
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	66.91	80.17
VIT_06s0004g04770.t01	Wine grape	plastid	59.53	58.79
PGSC0003DMT400058577	Potato	plastid	54.86	54.37
AT4G11690.1	Thale cress	endoplasmic reticulum	52.52	51.59
Bra040883.1-P	Field mustard	endoplasmic reticulum	52.16	50.43
CDY57780	Canola	endoplasmic reticulum	51.98	50.26
CDX86757	Canola	endoplasmic reticulum, extracellular	51.44	49.74
Zm00001d042911_P001	Maize	mitochondrion, plastid	32.19	43.66
Os05t0583950-00	Rice	mitochondrion	32.19	43.66
OQU87837	Sorghum	plastid	31.83	43.17
GSMUA_Achr6P34120_001	Banana	cytosol	36.69	41.05
TraesCS3D01G353400.1	Wheat	cytosol	30.22	40.98
HORVU3Hr1G086290.19	Barley	plastid	29.68	40.54
TraesCS3A01G359100.1	Wheat	cytosol	29.5	40.0
KRH29211	Soybean	cytosol	27.16	25.9
KRH24548	Soybean	mitochondrion	28.96	25.84
KRH17313	Soybean	mitochondrion	21.4	24.95
KRH72966	Soybean	mitochondrion	27.34	24.72
KRH44246	Soybean	cytosol	21.76	24.25
KRG99196	Soybean	cytosol	22.48	23.67
KRH33556	Soybean	cytosol	8.81	23.45
KRH29553	Soybean	mitochondrion	18.35	23.29
KRH18049	Soybean	plastid	28.06	22.71
KRH14574	Soybean	plastid	25.9	22.5
KRH54581	Soybean	mitochondrion	21.4	22.37
KRH16451	Soybean	plastid	27.34	22.13
KRH56553	Soybean	plastid	24.28	21.57
KRG89236	Soybean	plastid	29.86	21.34
KRH20741	Soybean	cytosol	22.3	21.12
KRH13392	Soybean	cytosol	21.58	20.44
KRH34922	Soybean	cytosol	16.73	20.26
KRH58559	Soybean	plastid	21.22	20.14
KRH40170	Soybean	mitochondrion	24.82	19.91
KRH49758	Soybean	plastid	25.18	19.89
KRH45820	Soybean	cytosol, mitochondrion, plastid	26.44	19.81
KRG90304	Soybean	cytosol	19.6	19.43
KRH42458	Soybean	plastid	25.72	19.04
KRG93154	Soybean	plastid	22.66	13.19

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100817044	MapMan:35.1	EMBL:ACUP02004685	EnsemblPlantsGene:GLYMA_07G217200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0080156
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7L342	EnsemblPlants:KRH50360	ProteinID:KRH50360
ProteinID:KRH50360.1	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF362
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002338647	:	:

Description

hypothetical protein

Coordinates

chr7:-:38985274..38986944

Molecular Weight (calculated)

62132.6 Da

IEP (calculated)

8.723

GRAVY (calculated)

0.107

Length

556 amino acids

Sequence
(BLAST)

001: MSQSHEALIL IQKMVKVPPT KALLLFNTAT YQGLQHTSHS ISFILNHLLS SGMLPQAQSL ILRLISGRIP SSLMLQLTQA HFTPCSTYTP LYDTVVNAYV
101: HSHSTDQALT FLHHMIHEGH VPLSNTFNNL LCLLIRSNYF DKAWWIFNEL KSKVVLDAYS FGIMIKGCCE AGYFVKGFRL LAMLEEFGLS PNVVIYTTLI
201: DGCCKDGNVM LAKNLFCKMN RLGLVPNPHT YSVLMNGFFK QGLQREGFQM YENMKRSGIV PNAYAYNCLI SEYCNDGMVD KAFKVFAEMR EKGIACGVMT
301: YNILIGGLCR GKKFGEAVKL VHKVNKVGLS PNIVTYNILI NGFCDVRKMD SAVRLFNQLK SSGLSPTLVT YNTLIAGYSK VENLAGALDL VKEMEERCIA
401: PSKVTYTILI DAFARLNHTE KACEMHSLME KSGLVPDVYT YSVLLHGLCV HGNMKEASKL FKSLGEMHLQ PNSVIYNTMI HGYCKEGSSY RALRLLNEMV
501: QSGMVPNVAS FCSTIGLLCR DEKWKEAELL LGQMINSGLK PSVSLYKMVH KVKGDV

Best Arabidopsis Sequence Match ( AT4G11690.1 )
(BLAST)

001: MAAKSQKTLV LLANLIKFPP LKAFSLLNSP NFHEFQHTHE SISILLRLLL SGNLFSHAQS LLLQVISGKI HSQFFTSSSL LHYLTESETS KTKFRLYEVI
101: INSYVQSQSL NLSISYFNEM VDNGFVPGSN CFNYLLTFVV GSSSFNQWWS FFNENKSKVV LDVYSFGILI KGCCEAGEIE KSFDLLIELT EFGFSPNVVI
201: YTTLIDGCCK KGEIEKAKDL FFEMGKLGLV ANERTYTVLI NGLFKNGVKK QGFEMYEKMQ EDGVFPNLYT YNCVMNQLCK DGRTKDAFQV FDEMRERGVS
301: CNIVTYNTLI GGLCREMKLN EANKVVDQMK SDGINPNLIT YNTLIDGFCG VGKLGKALSL CRDLKSRGLS PSLVTYNILV SGFCRKGDTS GAAKMVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMEKAIQL RLSMEELGLV PDVHTYSVLI HGFCIKGQMN EASRLFKSMV EKNCEPNEVI YNTMILGYCK EGSSYRALKL
501: LKEMEEKELA PNVASYRYMI EVLCKERKSK EAERLVEKMI DSGIDPSTSI LSLISRAKND SHVSSK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g11690 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0D6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.