CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49758	Soybean	plastid	65.42	72.3
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	62.21	63.52
CDX74435	Canola	mitochondrion	57.45	60.0
CDY30265	Canola	mitochondrion	56.3	60.0
AT5G39710.1	Thale cress	mitochondrion	57.58	59.97
Bra025651.1-P	Field mustard	mitochondrion	57.2	59.73
Solyc01g108410.1.1	Tomato	mitochondrion	54.24	55.02
PGSC0003DMT400066369	Potato	mitochondrion	54.24	55.02
OQU75844	Sorghum	cytosol	35.09	49.55
GSMUA_Achr3P04340_001	Banana	cytosol	40.75	48.18
Os06t0152500-00	Rice	plastid	40.36	45.24
TraesCS7A01G109000.1	Wheat	plastid	39.72	44.46
TraesCS7D01G103900.1	Wheat	plastid	39.2	43.88
Zm00001d010121_P001	Maize	plastid	38.95	43.85
TraesCS7B01G006900.1	Wheat	plastid	39.07	43.74
Zm00001d045319_P001	Maize	plastid	38.82	43.7
HORVU7Hr1G023200.23	Barley	cytosol	37.92	42.51
KRH29211	Soybean	cytosol	23.01	30.7
KRG99196	Soybean	cytosol	20.44	30.11
KRH50360	Soybean	cytosol, extracellular, plastid	21.34	29.86
KRH44246	Soybean	cytosol	19.02	29.66
KRH16451	Soybean	plastid	25.96	29.4
KRH02112	Soybean	extracellular, mitochondrion	20.18	28.97
KRH24548	Soybean	mitochondrion	23.14	28.89
KRH51875	Soybean	cytosol	21.08	28.87
KRH18049	Soybean	plastid	25.45	28.82
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	16.97	28.45
KRH14574	Soybean	plastid	23.26	28.28
KRH33556	Soybean	cytosol	7.46	27.75
KRH17313	Soybean	mitochondrion	16.97	27.67
KRH34922	Soybean	cytosol	16.32	27.67
KRH45820	Soybean	cytosol, mitochondrion, plastid	25.71	26.95
KRH72966	Soybean	mitochondrion	21.08	26.67
KRH42458	Soybean	plastid	25.71	26.63
KRH54581	Soybean	mitochondrion	17.35	25.38
KRH40170	Soybean	mitochondrion	22.49	25.25
KRH56553	Soybean	plastid	20.31	25.24
KRH20741	Soybean	cytosol	18.77	24.87
KRH13392	Soybean	cytosol	18.77	24.87
KRH58559	Soybean	plastid	18.38	24.4
KRH29553	Soybean	mitochondrion	13.37	23.74
KRG90304	Soybean	cytosol	16.32	22.64
KRG93154	Soybean	plastid	20.44	16.65

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100808787	MapMan:35.1	UniProt:A0A0R0EH27	EMBL:ACUP02012192	EnsemblPlantsGene:GLYMA_20G010100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRG89236	ProteinID:KRG89236
ProteinID:KRG89236.1	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF280	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0003DE91F8	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:872822..877464

Molecular Weight (calculated)

86263.8 Da

IEP (calculated)

8.848

GRAVY (calculated)

-0.065

Length

778 amino acids

Sequence
(BLAST)

001: MNLWTQFNLS QNHTRGIGHN TMAFPSSSSS SNHSLIADKA IAFLKRHPQR LASLSPHFTP QAASYVLLNS QSDQRTLLNF LTWAQAQAQA HNFFFTPHCK
101: CLALHILVRF KLYRTAHSLA ADLAATLPDP TGASLFRHLH DTFHLCSSPF SSSAVFDLVV KSLSRLGFVP KALTLLHLAN RHGFAPTVLS YNAVLDALLR
201: RSSSNHRDYD DAERVFRDMV RNGVSPNVYT YNVIIRGVVS QGDLEKGLGF MRKMEKEGIS PNVVTYNTLI DASCKKKKVK EAMALLRAMA VGGVAANLIS
301: YNSVINGLCG KGRMSEVGEL VEEMRGKGLV PDEVTYNTLV NGFCKEGNLH QGLVLLSEMV GKGLSPNVVT YTTLINCMCK AGNLSRAVEI FDQMRVRGLR
401: PNERTYTTLI DGFCQKGLMN EAYKVLSEMI VSGFSPSVVT YNALVHGYCF LGRVQEAVGI LRGMVERGLP PDVVSYSTVI AGFCRERELG KAFQMKEEMV
501: EKGVLPDTVT YSSLIQGLCL QQKLVEAFDL FREMMRRGLP PDEVTYTSLI NAYCVDGELS KALRLHDEMV QRGFLPDNVT YSVLINGLNK KARTKVAKRL
601: LLKLFYEESV PDDVTYNTLI ENCSNNEFKS VEGLVKGFCM KGLMNEADRV FKTMLQRNHK PNAAIYNLMI HGHSRGGNVH KAYNLYMELE HSSFACHTVA
701: VIALVKALAR EGMNDELSRL LQNILRSCRL NDAKVAKVLV EVNFKEGNMD AVLNVLTEMA KDGLLPDGGI HSSAPAST

Best Arabidopsis Sequence Match ( AT5G39710.1 )
(BLAST)

001: MFLTKTLIRR SLSTFASSPS DSLLADKALT FLKRHPYQLH HLSANFTPEA ASNLLLKSQN DQALILKFLN WANPHQFFTL RCKCITLHIL TKFKLYKTAQ
101: ILAEDVAAKT LDDEYASLVF KSLQETYDLC YSTSSVFDLV VKSYSRLSLI DKALSIVHLA QAHGFMPGVL SYNAVLDATI RSKRNISFAE NVFKEMLESQ
201: VSPNVFTYNI LIRGFCFAGN IDVALTLFDK METKGCLPNV VTYNTLIDGY CKLRKIDDGF KLLRSMALKG LEPNLISYNV VINGLCREGR MKEVSFVLTE
301: MNRRGYSLDE VTYNTLIKGY CKEGNFHQAL VMHAEMLRHG LTPSVITYTS LIHSMCKAGN MNRAMEFLDQ MRVRGLCPNE RTYTTLVDGF SQKGYMNEAY
401: RVLREMNDNG FSPSVVTYNA LINGHCVTGK MEDAIAVLED MKEKGLSPDV VSYSTVLSGF CRSYDVDEAL RVKREMVEKG IKPDTITYSS LIQGFCEQRR
501: TKEACDLYEE MLRVGLPPDE FTYTALINAY CMEGDLEKAL QLHNEMVEKG VLPDVVTYSV LINGLNKQSR TREAKRLLLK LFYEESVPSD VTYHTLIENC
601: SNIEFKSVVS LIKGFCMKGM MTEADQVFES MLGKNHKPDG TAYNIMIHGH CRAGDIRKAY TLYKEMVKSG FLLHTVTVIA LVKALHKEGK VNELNSVIVH
701: VLRSCELSEA EQAKVLVEIN HREGNMDVVL DVLAEMAKDG FLPNGIS

Arabidopsis Description

EMB2745Pentatricopeptide repeat-containing protein At5g39710 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.