CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045319_P001	Maize	plastid	91.65	73.08
Zm00001d010121_P001	Maize	plastid	91.65	73.08
Os06t0152500-00	Rice	plastid	81.49	64.7
TraesCS7D01G103900.1	Wheat	plastid	80.94	64.17
TraesCS7A01G109000.1	Wheat	plastid	80.58	63.88
TraesCS7B01G006900.1	Wheat	plastid	80.22	63.6
HORVU7Hr1G023200.23	Barley	cytosol	80.04	63.54
PGSC0003DMT400066275	Potato	cytosol	27.22	46.15
GSMUA_Achr3P04340_001	Banana	cytosol	48.09	40.27
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	51.72	37.4
CDX74435	Canola	mitochondrion	50.27	37.18
Bra025651.1-P	Field mustard	mitochondrion	50.09	37.05
CDY30265	Canola	mitochondrion	48.82	36.85
AT5G39710.1	Thale cress	mitochondrion	49.36	36.41
Solyc01g108410.1.1	Tomato	mitochondrion	49.91	35.85
OQU81794	Sorghum	mitochondrion, peroxisome	25.95	35.48
PGSC0003DMT400066369	Potato	mitochondrion	49.18	35.33
KRG89236	Soybean	plastid	49.55	35.09
KXG40115	Sorghum	cytosol	27.4	34.95
OQU90004	Sorghum	cytosol	28.31	32.84
KRH49758	Soybean	plastid	39.93	31.25
OQU87837	Sorghum	plastid	23.23	31.22
EER99880	Sorghum	cytosol	25.23	29.08
KXG31660	Sorghum	mitochondrion	17.06	27.49
EES09272	Sorghum	plastid	30.31	22.97
EES10956	Sorghum	mitochondrion	23.05	20.68
KXG39937	Sorghum	cytosol, plastid	29.58	20.53
OQU78719	Sorghum	cytosol	28.13	20.29
OQU83816	Sorghum	mitochondrion	15.97	19.82
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	21.23	19.5
EER96725	Sorghum	mitochondrion, plastid	22.14	19.15
EES00885	Sorghum	cytosol, mitochondrion	19.42	18.67
KXG22891	Sorghum	mitochondrion	18.33	17.27

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1W0VRE9	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlants:OQU75844	ProteinID:OQU75844	ProteinID:OQU75844.1	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF280	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3010G042200
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0009DC8A79	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:3249552..3251584

Molecular Weight (calculated)

60794.3 Da

IEP (calculated)

7.040

GRAVY (calculated)

-0.018

Length

551 amino acids

Sequence
(BLAST)

001: MLSDGVAPNV YTYNILVRAL CGRGHRKEAL SVLRDMRGAG CDPNAVTYNT LVAAFCRAGE VDRAERLVDM MREGGLKPNL VTFNSVVNGI CKAGRMEDAR
101: KVFDEMVKEG LAPDGVSYNT LVGGYCKVGC SHEALSVFAE MTRKGIMPDV VTFTSLIHVM CKAGNLERAV GLVREMRERG LQMNEITFTA LIDGFCKKGF
201: LDDALLAVRE MRQCRIQPSV VCYNALINGY CMVGRMDEAR ELVREMEAKG VKPDVVTYST ILSAYCKNGD THSAFQLNQQ MLENGVLPDA ITYSSLIRVL
301: CEEKRLGDAH VLFKNMISLG LQPDEVTYTS LIDGHCKEGN VERALSLHDE MVKAGVLPDV VTYSVLINGL SKSARTKEAQ RLLFKLYHEE PVPANIKYDA
401: LMRCCRNAEL KSVLALLKGF CMKGLMNEAD KVYQSILDRN WNLDGSVYSV LIHGHCREGN VMKALSFHKQ MLQCGFAPNS TSTISLIRGL FEKGMVVEAD
501: QVIQQLLNCC SLADAEASKA LIDLNLKEGN VDAVLDVLHG MARDGLLPSP R

Best Arabidopsis Sequence Match ( AT5G39710.1 )
(BLAST)

001: MFLTKTLIRR SLSTFASSPS DSLLADKALT FLKRHPYQLH HLSANFTPEA ASNLLLKSQN DQALILKFLN WANPHQFFTL RCKCITLHIL TKFKLYKTAQ
101: ILAEDVAAKT LDDEYASLVF KSLQETYDLC YSTSSVFDLV VKSYSRLSLI DKALSIVHLA QAHGFMPGVL SYNAVLDATI RSKRNISFAE NVFKEMLESQ
201: VSPNVFTYNI LIRGFCFAGN IDVALTLFDK METKGCLPNV VTYNTLIDGY CKLRKIDDGF KLLRSMALKG LEPNLISYNV VINGLCREGR MKEVSFVLTE
301: MNRRGYSLDE VTYNTLIKGY CKEGNFHQAL VMHAEMLRHG LTPSVITYTS LIHSMCKAGN MNRAMEFLDQ MRVRGLCPNE RTYTTLVDGF SQKGYMNEAY
401: RVLREMNDNG FSPSVVTYNA LINGHCVTGK MEDAIAVLED MKEKGLSPDV VSYSTVLSGF CRSYDVDEAL RVKREMVEKG IKPDTITYSS LIQGFCEQRR
501: TKEACDLYEE MLRVGLPPDE FTYTALINAY CMEGDLEKAL QLHNEMVEKG VLPDVVTYSV LINGLNKQSR TREAKRLLLK LFYEESVPSD VTYHTLIENC
601: SNIEFKSVVS LIKGFCMKGM MTEADQVFES MLGKNHKPDG TAYNIMIHGH CRAGDIRKAY TLYKEMVKSG FLLHTVTVIA LVKALHKEGK VNELNSVIVH
701: VLRSCELSEA EQAKVLVEIN HREGNMDVVL DVLAEMAKDG FLPNGIS

Arabidopsis Description

EMB2745Pentatricopeptide repeat-containing protein At5g39710 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.