CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052540_P001	Maize	plastid	91.06	91.82
OQU78719	Sorghum	cytosol	78.4	74.61
Os12t0152600-01	Rice	plastid	72.76	73.88
TraesCS5A01G128400.1	Wheat	plastid	66.02	71.43
HORVU5Hr1G042300.1	Barley	plastid	70.01	71.39
TraesCS5D01G136000.1	Wheat	plastid	65.75	71.13
TraesCS5B01G127400.1	Wheat	plastid	65.75	71.13
GSMUA_Achr6P35510_001	Banana	cytosol	49.11	50.93
Bra024554.1-P	Field mustard	cytosol	20.77	44.67
KRH16451	Soybean	plastid	41.82	44.25
KRH18049	Soybean	plastid	40.99	43.38
Bra024552.1-P	Field mustard	cytosol	14.99	43.25
VIT_01s0011g04390.t01	Wine grape	plastid	42.37	42.9
CDY04764	Canola	cytosol	20.77	42.66
CDY04754	Canola	cytosol	13.76	41.32
PGSC0003DMT400078379	Potato	cytosol	39.06	41.04
CDY21405	Canola	cytosol	23.66	40.66
Solyc05g008560.1.1	Tomato	mitochondrion	39.61	38.2
AT1G22960.1	Thale cress	mitochondrion	36.04	36.49
KXG31660	Sorghum	mitochondrion	14.58	30.99
OQU75844	Sorghum	cytosol	22.97	30.31
CDY04753	Canola	mitochondrion, plastid	17.33	30.29
KXG40115	Sorghum	cytosol	17.88	30.09
OQU81794	Sorghum	mitochondrion, peroxisome	16.51	29.78
EER99880	Sorghum	cytosol	19.39	29.5
OQU90004	Sorghum	cytosol	18.57	28.42
OQU87837	Sorghum	plastid	15.13	26.83
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	20.5	24.83
EES10956	Sorghum	mitochondrion	20.63	24.43
EER96725	Sorghum	mitochondrion, plastid	21.18	24.18
KXG39937	Sorghum	cytosol, plastid	26.13	23.93
OQU83816	Sorghum	mitochondrion	14.31	23.42
KXG22891	Sorghum	mitochondrion	17.88	22.22
EES00885	Sorghum	cytosol, mitochondrion	15.68	19.9

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8070636	UniProt:C5Y4P7	EnsemblPlants:EES09272	ProteinID:EES09272
ProteinID:EES09272.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF724	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3005G038500
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A8685F	RefSeq:XP_002450284.1	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:3532042..3535210

Molecular Weight (calculated)

80374.3 Da

IEP (calculated)

7.245

GRAVY (calculated)

0.064

Length

727 amino acids

Sequence
(BLAST)

001: MLFNILHCKS QAPVTAAAAA AAISSPRFSS ASLPLPLPAL FPPPPPPSPP PAPLPEESPF AALLASDPAP PEPLRQVLAT GDVHAALRGL PGLARQLFRW
101: AEATPRGFPR SASAFAAVLL PLAHANHIRA AYPVSLRALH LGLLLPVLSL LLAAPLSPAL RSLLSLLLRL SAKFSAESQA RDATPAACST LCLAAFRVVA
201: CHGVAPDVRD CNCVLRVLRD AARWDDVRAV YREMLQLEIE PTIVTYNTLL DSFLKEGRKD EASMLLKEME TQGGGCLLND VTYNVVISFL AREGHLENAA
301: KLVDSMRLSK KASSFTYNPL ITALLERGFV QKVEALQMEM ENEGIMPTLV TYNAIIHGLL KSEQVEAAQL KFAEMRAMGL LPDLITYNSM LNGYCKAGNL
401: KEALWLLGDL RRAGLAPTVL TYNTLIDGYC RLGGLEEARR LKEEMVEQGC FPDVCTYTIL MNGSHKVRNL PMAREFFDEM LSKGLQPDCF AYNTRICAEL
501: ILGDTHKAFQ LREVMMLKGI YPDTVTYNVI IDGLCKTGNL KDAKDLKMKM VSDGLQPDCI TYTCLIHAHC ERGLLSEARK LLNGMVSDGL QPSVVTYTIL
601: IHTCCRRGNL YSAYGWFRKM LDVGIEPNEI TYNVLIHALC RTGRTLLAYH HFHEMLERGL APNKYTYTLL IDGNCREGNW ADAIRLYFEM HQNGIPPDYC
701: THNALFKGFD KGHMYHAIEY LENIVLG

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.