Factsheet for Zm00001d052540_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09272	Sorghum	plastid	91.82	91.06
Zm00001d044707_P001	Maize	plastid	77.25	78.23
Zm00001d023422_P001	Maize	plastid	77.67	78.21
Zm00001d000093_P001	Maize	cytosol	56.73	77.32
Os12t0152600-01	Rice	plastid	71.98	72.49
TraesCS5A01G128400.1	Wheat	plastid	64.91	69.64
TraesCS5D01G136000.1	Wheat	plastid	64.77	69.49
HORVU5Hr1G042300.1	Barley	plastid	68.65	69.42
TraesCS5B01G127400.1	Wheat	plastid	64.63	69.35
GSMUA_Achr6P35510_001	Banana	cytosol	48.27	49.64
Bra024554.1-P	Field mustard	cytosol	19.97	42.6
KRH16451	Soybean	plastid	40.08	42.07
KRH18049	Soybean	plastid	39.94	41.92
VIT_01s0011g04390.t01	Wine grape	plastid	41.33	41.5
Bra024552.1-P	Field mustard	cytosol	14.29	40.87
CDY04764	Canola	cytosol	19.97	40.68
CDY04754	Canola	cytosol	13.45	40.08
PGSC0003DMT400078379	Potato	cytosol	38.28	39.88
CDY21405	Canola	cytosol	23.3	39.72
Solyc05g008560.1.1	Tomato	mitochondrion	38.84	37.14
AT1G22960.1	Thale cress	mitochondrion	34.95	35.1
CDY04753	Canola	mitochondrion, plastid	17.2	29.81
Zm00001d039548_P001	Maize	mitochondrion	17.89	28.41
Zm00001d027800_P001	Maize	mitochondrion	25.24	28.04
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	18.17	27.07
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	18.17	27.07
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	19.83	26.63
Zm00001d010121_P001	Maize	plastid	25.52	26.63
Zm00001d023302_P001	Maize	mitochondrion	25.8	26.57
Zm00001d003294_P001	Maize	plastid	19.28	26.53
Zm00001d045319_P001	Maize	plastid	25.38	26.48
Zm00001d042911_P001	Maize	mitochondrion, plastid	14.98	26.34
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	18.59	25.72
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	19.14	25.7
Zm00001d018528_P001	Maize	cytosol	20.53	25.47
Zm00001d020436_P001	Maize	mitochondrion	22.05	25.04
Zm00001d006478_P001	Maize	mitochondrion	25.38	24.56
Zm00001d048880_P001	Maize	mitochondrion	22.47	23.96
Zm00001d028107_P001	Maize	nucleus	21.91	22.13
Zm00001d030479_P001	Maize	plastid	14.98	21.43
Zm00001d009391_P001	Maize	cytosol	16.5	20.77

Protein Annotations

EnsemblPlants:Zm00001d052540_P001	EnsemblPlants:Zm00001d052540_T001	EnsemblPlantsGene:Zm00001d052540	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF724	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:AQK57399.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI000845828B	UniProt:A0A1D6QHQ3	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr4:-:192578172..192581289

Molecular Weight (calculated)

80010.8 Da

IEP (calculated)

8.008

GRAVY (calculated)

0.059

Length

721 amino acids

Sequence
(BLAST)

001: MLFNIPHCKS QAPVTVAAAA VAAISSPRFS SASLPLPALV PPPPPTPLPE ESPFAALLAS VPPPPEPLRQ VLATGDVHAA LRGLPGLARQ LFRWAEATPR
101: GFPSSASAFA AVLVPLAHAN HIRTAYPVSL RALRLGLLLP VLSLLLSTPL SSALRSLVSL LLRLSTNFST ERDTRHATPA ACSTLCLAAF RLVTCHGVAP
201: DVRDCNRVLR VLRDAARWDD VRAVYGEMLQ LRVEPTIVTY NTLLDSFLKE GRKDEASMLL KEMETQGGGF SLNDVTFNVV ISFLAREGHL ENAVKLVDSM
301: RLSKKASSFT YNPLITALLE RGFVRKAEAL QMEMENEGIM PTVVTYNAII HGLLKCEQAE AAQVKFAEMR AMGLLPDVIT YNSLLNRYCK AGNLKEALWL
401: LGDLRRAGLA PTVLTYNTLI DGYCRLGDLA EARRLKEEMV EQGCFPDVCT YTILMNGSRK VRNLAMAREF FDEMLSKGLQ PDCFAYNTRI CAELTLSSTP
501: MAFQLREVMM LKGIYPDTVT YNVIIDGLCK TGNLKDAKRL KTKMVSDGLQ PDCITYTCLI HAHCERGLLR EARKLLNGMV SDGLQPSVVT YTILVHTCCR
601: RGNLYSAYGW FRKMLDVGIE PNEITYNVLI HALCMTGRTL LAFRHFHEML ERGLAPNKYT YTLLIDGNCR EGNWADAIRL YFEMHQNGIP PDYCTHNALF
701: KGFDEGHMYH AIEYMENIVL G

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.