Factsheet for VIT_01s0011g04390.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16451	Soybean	plastid	60.17	62.88
KRH18049	Soybean	plastid	59.75	62.45
PGSC0003DMT400078379	Potato	cytosol	59.19	61.42
Solyc05g008560.1.1	Tomato	mitochondrion	60.72	57.82
Bra024554.1-P	Field mustard	cytosol	24.79	52.66
Bra024552.1-P	Field mustard	cytosol	18.25	51.98
CDY21405	Canola	cytosol	30.08	51.06
CDY04764	Canola	cytosol	24.65	50.0
GSMUA_Achr6P35510_001	Banana	cytosol	48.19	49.36
CDY04754	Canola	cytosol	16.57	49.17
AT1G22960.1	Thale cress	mitochondrion	47.49	47.49
Zm00001d000093_P001	Maize	cytosol	34.96	47.45
CDY04753	Canola	mitochondrion, plastid	26.32	45.43
Zm00001d044707_P001	Maize	plastid	42.48	42.84
Os12t0152600-01	Rice	plastid	42.48	42.6
Zm00001d023422_P001	Maize	plastid	42.34	42.46
EES09272	Sorghum	plastid	42.9	42.37
HORVU5Hr1G042300.1	Barley	plastid	41.5	41.8
TraesCS5B01G127400.1	Wheat	plastid	38.86	41.52
TraesCS5A01G128400.1	Wheat	plastid	38.72	41.37
Zm00001d052540_P001	Maize	plastid	41.5	41.33
TraesCS5D01G136000.1	Wheat	plastid	38.44	41.07
OQU78719	Sorghum	cytosol	42.48	39.92
VIT_06s0009g03510.t01	Wine grape	mitochondrion	25.63	30.21
VIT_01s0010g01780.t01	Wine grape	cytosol	23.12	29.86
VIT_14s0006g00170.t01	Wine grape	mitochondrion	22.84	27.7
VIT_13s0019g03690.t01	Wine grape	cytosol	18.52	27.25
VIT_14s0060g01220.t01	Wine grape	mitochondrion	22.98	27.09
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	28.27	26.64
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	27.72	26.6
VIT_17s0000g06480.t01	Wine grape	cytosol	10.03	26.47
VIT_08s0040g01530.t01	Wine grape	cytosol	22.84	26.45
VIT_06s0004g04770.t01	Wine grape	plastid	20.47	26.11
VIT_12s0055g00970.t01	Wine grape	plastid	22.84	25.87
VIT_14s0083g00550.t01	Wine grape	cytosol	20.2	24.58
VIT_12s0057g00740.t01	Wine grape	mitochondrion	16.57	22.45
VIT_01s0011g01910.t01	Wine grape	mitochondrion	22.01	22.32
VIT_17s0000g03060.t01	Wine grape	plastid	20.2	21.97

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100254230	wikigene:100254230	MapMan:35.1	ProteinID:CCB50863	ProteinID:CCB50863.1
UniProt:F6HFL4	EMBL:FN595752	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100254230
wikigene:LOC100254230	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF724	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000198295C	ArrayExpress:VIT_01s0011g04390
EnsemblPlantsGene:VIT_01s0011g04390	EnsemblPlants:VIT_01s0011g04390.t01	unigene:Vvi.15622	RefSeq:XP_002280156	RefSeq:XP_002280156.1	:

Description

No Description!

Coordinates

chr1:-:3999496..4002209

Molecular Weight (calculated)

81185.0 Da

IEP (calculated)

7.710

GRAVY (calculated)

-0.030

Length

718 amino acids

Sequence
(BLAST)

001: MTLCLRASKA SATINPTRSI KVRLLFPCSF SFHDSTSNHS APPFSETHFQ DVISKSIREK PSNFSNYYWL SHQFGPVIVD PDLFVRVLSS FRTSPRMALR
101: LFRWAESQPG FRRSEFVFCA ILEILAQNNL MRSAYWVMER VINANMHRIV DVLIGGCVSS EVSVKILDLL IWVYSKKSMV EQCLSVFDKM IKSRLSPDVK
201: NCNRILRILR DKDLMSKAVE VYRTMGEFGI KPTIVTYNTL LDSYCKGGKV QQGLDLLSEM QRRGCAPNDV TYNVLINGLS KKGEFEQAKG LIGEMLKTGL
301: KVSAYTYNPL IYGYFNKGML AEALSLQEEM VLKGASPTVA TYNSFIYGLC KLGRMSDAMQ QLSDMLANNL LPDVVSYNTL IYGYCRLGNL MKAFLLFDEL
401: RSIYLFPTIV TYNTLLDGLC RQGELEVAQQ LKVEMINEGI APDIVTYTIL VNGSCKMGSL SMAQEFFDEM LHEGLELDSY AYATRIVGEL KLGDTSRAFS
501: LQEEMLAKGF PPDLIIYNVV VDGLCKLGNL EEASELLQKM VSDGVIPDYV TYTSIIHAHL ENGRLRKGRE IFYEMLSKGL TPSVVTYTVL IHGHAGKGRL
601: ERAFIYFSEM QEKGILPNVI TYNSLINGLC KVRRMDQAYN FFAEMVEKGI FPNKYSYTIL INENCNMGNW QEALSLYKQM LDRGVQPDSC THSALLKQLG
701: KDCKLQAVRQ LESLLDSE

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.