Factsheet for VIT_17s0000g03060.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
peroxisome 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56553	Soybean	plastid	53.18	56.07
Solyc03g007390.2.1	Tomato	plastid	53.48	55.59
PGSC0003DMT400023499	Potato	plastid	52.73	55.33
CDY42586	Canola	plastid	51.06	54.35
Bra025578.1-P	Field mustard	plastid	50.76	53.77
CDY50117	Canola	plastid	50.76	53.77
AT5G40400.2	Thale cress	cytosol	50.15	48.6
VIT_12s0057g00740.t01	Wine grape	mitochondrion	21.21	26.42
VIT_14s0006g00170.t01	Wine grape	mitochondrion	23.64	26.35
VIT_14s0083g00550.t01	Wine grape	cytosol	23.18	25.93
VIT_14s0060g01220.t01	Wine grape	mitochondrion	23.03	24.96
VIT_12s0055g00970.t01	Wine grape	plastid	23.94	24.92
VIT_06s0004g04770.t01	Wine grape	plastid	20.15	23.62
VIT_01s0010g01780.t01	Wine grape	cytosol	19.7	23.38
VIT_06s0009g03510.t01	Wine grape	mitochondrion	21.21	22.99
VIT_08s0040g01530.t01	Wine grape	cytosol	19.55	20.81
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	23.79	20.6
VIT_01s0011g04390.t01	Wine grape	plastid	21.97	20.2
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	22.88	20.19
VIT_01s0011g01910.t01	Wine grape	mitochondrion	20.3	18.93
VIT_13s0019g03690.t01	Wine grape	cytosol	12.42	16.8
VIT_17s0000g06480.t01	Wine grape	cytosol	4.55	11.03
Os03t0201200-01	Rice	nucleus	2.12	6.01

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EMBL:AM451055	ProteinID:CAN65388	ProteinID:CAN65388.1	ProteinID:CBI15512
ProteinID:CBI15512.3	UniProt:D7SJ51	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF657	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001BE0A93	ArrayExpress:VIT_17s0000g03060	EnsemblPlantsGene:VIT_17s0000g03060
EnsemblPlants:VIT_17s0000g03060.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:-:2882627..2888851

Molecular Weight (calculated)

75195.4 Da

IEP (calculated)

6.843

GRAVY (calculated)

-0.059

Length

660 amino acids

Sequence
(BLAST)

001: MNPTSIHAIK LNLYKCPLSL TVLRFILIPK FPYSSSSSSS LQTLNQSQTN SISNSLYHLL PQTQNPNNIV NLICSNLKQH NSNLALLHTE VNALLPHLGA
101: QEISRVLLRC QSDSFTALSF FNWVKNDLGL RPSTQNYCIV VHTLAWSRNF SQAMKFLCEL VELVKDDLPS EDVFKNLILC TEDCNWDPVV FDMLVKAYLR
201: MGRVREGLRS FRRMLRVGFV PTVITSNYLL NGLLKLNYTD RCWEVYEEME RFGIAPNLYT FNILTHVLCK DGDTGKVNKF LEKMEEEGFD PDIVTYNTLI
301: NSYCRKGRLD DAFYLYKIMY RRGVVPDLVS YTALMNGLCK EGRVREAHQL FHRMVHRGLS PDIVTYNTLI HGYCKEGKMQ ESRSLLHDMI WNGISPDSFT
401: CWVLVEGYGK EGKFLSALNL VVELQRFGVS ISQDIYSYLI VALCRENRPF AAKNLLERMS KDGHKPELEI YNELIKSFCQ CDCIAEALLL KMEMVDKEIK
501: PNLATYRAVI GCLSRLSRSM EGESLVGEMV ASGMLPDLEI CRALFYGYCR ENDIDKAESL LSFFAKEFQI HDTESFNALI RITSAKGDIA RSLEIQDMML
601: KMGLLPNPLT CNPFAILTSR LRVDVKAANM AIFDGMNASS LWGDNESLEE NALQVLLGKL

Best Arabidopsis Sequence Match ( AT5G40400.2 )
(BLAST)

001: MCSKTRRSNP VSVRGDANHL SFLRTQSIVP YVNIYILHLN GILNRCGTNT YSFSSKPLPS TASVSLFSLR FMKNLVSNLR FFSSYSSSIV PRCSNIPKPI
101: LNPLYNLLPQ SQNPSKIVDV ICSTLNHSDY SVLLPNLRDE VKSLIPHLGY PEISRVLLRF QSDASRAITF FKWVKFDLGK RPNVGNYCLL LHILVSSKKF
201: PLAMQFLCEL IELTSKKEEV DVFRVLVSAT DECNWDPVVF DMLVKGYLKL GLVEEGFRVF REVLDSGFSV SVVTCNHLLN GLLKLDLMED CWQVYSVMCR
301: VGIHPNTYTF NILTNVFCND SNFREVDDFL EKMEEEGFEP DLVTYNTLVS SYCRRGRLKE AFYLYKIMYR RRVVPDLVTY TSLIKGLCKD GRVREAHQTF
401: HRMVDRGIKP DCMSYNTLIY AYCKEGMMQQ SKKLLHEMLG NSVVPDRFTC KVIVEGFVRE GRLLSAVNFV VELRRLKVDI PFEVCDFLIV SLCQEGKPFA
501: AKHLLDRIIE EEGHEAKPET YNNLIESLSR CDAIEEALVL KGKLKNQNQV LDAKTYRALI GCLCRIGRNR EAESLMAEMF DSEVKPDSFI CGALVYGYCK
601: ELDFDKAERL LSLFAMEFRI FDPESYNSLV KAVCETGCGY KKALELQERM QRLGFVPNRL TCKYLIQVLE QPSLPNHLPE N

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.