Factsheet for VIT_08s0040g01530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	43.23	54.58
KRH33556	Soybean	cytosol	17.74	52.63
HORVU2Hr1G019920.1	Barley	cytosol	31.45	52.14
AT2G32630.1	Thale cress	mitochondrion, plastid	51.77	51.44
Bra022891.1-P	Field mustard	plastid	50.48	50.98
CDX84733	Canola	plastid	50.32	50.81
CDX79463	Canola	plastid	50.0	50.24
PGSC0003DMT400027103	Potato	cytosol	32.42	49.14
EER99880	Sorghum	cytosol	37.42	48.54
KRG90304	Soybean	cytosol	42.74	47.24
Solyc10g084080.1.1	Tomato	cytosol, extracellular	38.87	46.98
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	39.52	45.62
Os07t0671200-00	Rice	extracellular	40.48	45.55
HORVU2Hr1G019880.2	Barley	cytosol	26.29	45.28
TraesCS2B01G133900.1	Wheat	plastid	39.19	45.17
TraesCS2A01G114800.1	Wheat	plastid	39.19	45.17
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	39.03	45.07
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	37.42	44.53
TraesCS2D01G115600.1	Wheat	cytosol, plastid	39.19	41.54
PGSC0003DMT400027098	Potato	cytosol	33.06	33.17
KRG93154	Soybean	plastid	49.52	32.15
PGSC0003DMT400027113	Potato	cytosol, plastid	51.13	31.39
VIT_01s0010g01780.t01	Wine grape	cytosol	24.84	27.7
VIT_17s0000g06480.t01	Wine grape	cytosol	11.94	27.21
VIT_06s0004g04770.t01	Wine grape	plastid	24.35	26.82
VIT_12s0055g00970.t01	Wine grape	plastid	27.1	26.5
VIT_14s0060g01220.t01	Wine grape	mitochondrion	25.97	26.44
VIT_06s0009g03510.t01	Wine grape	mitochondrion	25.0	25.45
VIT_14s0006g00170.t01	Wine grape	mitochondrion	24.19	25.34
Solyc10g084090.1.1	Tomato	cytosol	54.52	25.28
VIT_14s0083g00550.t01	Wine grape	cytosol	23.71	24.92
VIT_13s0019g03690.t01	Wine grape	cytosol	18.87	23.98
VIT_12s0057g00740.t01	Wine grape	mitochondrion	20.48	23.96
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	28.23	22.97
VIT_01s0011g04390.t01	Wine grape	plastid	26.45	22.84
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	26.77	22.19
VIT_01s0011g01910.t01	Wine grape	mitochondrion	25.0	21.89
VIT_17s0000g03060.t01	Wine grape	plastid	20.81	19.55

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100251700	wikigene:100251700	MapMan:35.1	ProteinID:CCB57095	ProteinID:CCB57095.1
UniProt:F6HR46	EMBL:FN596008	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100251700
wikigene:LOC100251700	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF418	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001983B9D
ArrayExpress:VIT_08s0040g01530	EnsemblPlantsGene:VIT_08s0040g01530	EnsemblPlants:VIT_08s0040g01530.t01	RefSeq:XP_002276762	RefSeq:XP_002276762.2	SEG:seg

Description

No Description!

Coordinates

chr8:+:12680001..12681863

Molecular Weight (calculated)

69521.3 Da

IEP (calculated)

6.953

GRAVY (calculated)

-0.123

Length

620 amino acids

Sequence
(BLAST)

001: MWSNLKKAFS SNPSLKLNQE IAGKISKTLV SSGAKSLQTT PSLLSSLNSQ TVHLILSNHI LTAESCLDFF HFIRKNYYKP DLRAYITLIF KLYRSRKSDK
101: LHKSQKFAEI RHLFNCAAVD DGLRVPVTVI ASLVDDACNE SKCNRAKFKE KFFDLLFRVY ADNKMFGEAL EAFEHMEKKG FHIDERSCLV YLLALRRGGQ
201: VDSCLRFFRR MVNLDVEVTV YSLTIVLDGL CKRGDVEMGR KLMDEVAAKG VKANVVTYNA FIEGYFKRLD LGGVAEILTL MEKEGVACNV VTYTLLIHGF
301: SNIGKIEEAQ RLFEEMREKG IEADVYVYTS IISCNCRSGN VKRALVLFDE MTDKGLIPSA HTYGALIHGV CKAGQMEAAQ MLVNEMQGKG IDLNPVIFNT
401: LIDGYCESGM VDEALRLQVV MEKKGLESDV FAYNSIASGL CKLNRKDEAK GLLFSMVERG VSPNTMSFTT LIDIYCKEGN FVEAKRVFRE MEEKGNVPNI
501: ITYNVLIDGY SKRGNMKEAH KLKDELENRG LIPDVYTCTS LIHGECIDGK VDMALKLFDE MPQRGLVPNV VTYTAMISGL SKDGRSEEAF KLYDEMKETG
601: LTPDDTVYSS LVGSLHSAES

Best Arabidopsis Sequence Match ( AT2G32630.1 )
(BLAST)

001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.