Factsheet for PGSC0003DMT400027098

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027103	Potato	cytosol	24.76	37.41
PGSC0003DMT400027113	Potato	cytosol, plastid	59.87	36.63
KRH33556	Soybean	cytosol	11.81	34.93
VIT_08s0040g01530.t01	Wine grape	cytosol	33.17	33.06
GSMUA_Achr11P...	Banana	cytosol	23.3	29.33
AT2G32630.1	Thale cress	mitochondrion, plastid	28.32	28.04
CDX84733	Canola	plastid	27.02	27.2
Bra022891.1-P	Field mustard	plastid	26.86	27.04
KRG90304	Soybean	cytosol	24.43	26.92
CDX79463	Canola	plastid	26.7	26.74
EER99880	Sorghum	cytosol	20.55	26.57
Os07t0671200-00	Rice	extracellular	23.62	26.5
HORVU2Hr1G019920.1	Barley	cytosol	15.7	25.94
TraesCS2B01G133900.1	Wheat	plastid	22.17	25.46
TraesCS2A01G114800.1	Wheat	plastid	22.01	25.28
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	21.84	25.14
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	21.52	24.77
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	20.39	24.18
TraesCS2D01G115600.1	Wheat	cytosol, plastid	21.84	23.08
PGSC0003DMT400040701	Potato	mitochondrion	20.39	22.91
PGSC0003DMT400034430	Potato	cytosol	16.18	20.83
PGSC0003DMT400015722	Potato	cytosol	16.83	19.62
HORVU2Hr1G019880.2	Barley	cytosol	10.19	17.5
KRG93154	Soybean	plastid	25.89	16.75
PGSC0003DMT400007278	Potato	mitochondrion	16.18	16.53
PGSC0003DMT400078379	Potato	cytosol	17.31	15.46
PGSC0003DMT400066731	Potato	mitochondrion, plastid	15.21	15.21
PGSC0003DMT400058577	Potato	plastid	13.75	15.15
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	14.4	14.57
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	14.4	14.57
PGSC0003DMT400003372	Potato	mitochondrion	17.15	14.52
PGSC0003DMT400024895	Potato	cytosol	10.68	14.41
PGSC0003DMT400058276	Potato	mitochondrion	16.83	13.83
PGSC0003DMT400026741	Potato	mitochondrion	15.21	13.13
PGSC0003DMT400023499	Potato	plastid	13.27	13.04
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	15.86	12.88
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	15.86	12.88
PGSC0003DMT400066369	Potato	mitochondrion	14.72	11.86
PGSC0003DMT400066275	Potato	cytosol	1.62	3.08

Protein Annotations

EnsemblPlants:PGSC0003DMT400027098	EnsemblPlantsGene:PGSC0003DMG401010456	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF418
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PGSC:PGSC0003DMG401010456	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI000296B228	UniProt:M1AP65	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG401010456]

Coordinates

chr10:-:55021845..55026920

Molecular Weight (calculated)

69786.3 Da

IEP (calculated)

7.789

GRAVY (calculated)

-0.159

Length

618 amino acids

Sequence
(BLAST)

001: MEDEGHEPDA NAYNIIATGL RKLDLHDEAK RLLLSMVDRG VAPNVLAYTS LIDIYCKQGD FFEAKRILSE METKGIKPST GTYNALIDGY FKHGNFIEAK
101: RALIEMETKG VKPNTTTYTA LIDGYCKQGD FVKAKRTLIE MESNGVMPNT NTYTALIDGY CQKGMMNEAY KLRIVMESKD LIPNVYTYTS LVHGECKSGN
201: VDDALKLFNE MPTKGLVPNV VTYTAVISGL SKEGRSDLLK SKEFAEAENI LNAVVVTDGM RKPVSKIASL LSENHVKCNV RGKMFNMLFS VYVNNTRFNE
301: ALQVFDYMKK GRFRIDDRAC MVYLLAMKRQ RQYDSLFEFF HKMVEFNVKI TVYSMTVVVD GLCKMGKVCE ARKLMDEMAS KRVKPSDYTY NILLQAYMKI
401: LDFVAVKEIL RKMEKDGFDL NLTSYTLLIK GYSTFGDLVE VERLFKEIEK KGIEPNVHLC TSMISGYSKL GNVMKAFSTF VEMVERGLIP DGHTYGALIN
501: VFCKAGLMQG AEVLLNEMQG KGISIDRVIF NTMMDGYCKK GNVDEALRLQ TIMEGEGHQP DANAYNIIAT GLRKLELYDE AKMLLLSMVD RGVAPDTISY
601: TTLIDIYCKK EKIFSTCK

Best Arabidopsis Sequence Match ( AT2G32630.1 )
(BLAST)

001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.